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AT5G05190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.954
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25747881 (2015): endoplasmic reticulum
  • PMID:25747881 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF3133)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT3G56410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15680eggNOG:ENOG410IWV3eggNOG:ENOG410YZZSEMBL:AB018111EMBL:AY099876EMBL:BT008380EMBL:CP002688
EnsemblPlants:AT5G05190EnsemblPlants:AT5G05190.1entrez:830401GeneID:830401Genevisible:Q9FHK4Gramene:AT5G05190.1hmmpanther:PTHR31105
hmmpanther:PTHR31105:SF2HOGENOM:HOG000155372InParanoid:Q9FHK4IntAct:Q9FHK4InterPro:IPR021480iPTMnet:Q9FHK4KEGG:ath:AT5G05190
ncoils:CoilOMA:THDINANPaxDb:Q9FHK4Pfam:PF11331Pfam:Q9FHK4PhylomeDB:Q9FHK4PRIDE:Q9FHK4
PRO:PR:Q9FHK4Proteomes:UP000006548RefSeq:NP_196138.1STRING:3702.AT5G05190.1TAIR:AT5G05190UniGene:At.22863UniGene:At.66673
UniProt:Q9FHK4
Coordinates (TAIR10) chr5:+:1541853..1543875
Molecular Weight (calculated) 68354.40 Da
IEP (calculated) 6.87
GRAVY (calculated) -1.03
Length 615 amino acids
Sequence (TAIR10)
(BLAST)
001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)