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AT5G05150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15860012 (2005): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : autophagy-related gene 18E
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
autophagy-related gene 18E (G18E); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZ6eggNOG:KOG2111EMBL:AB018111EMBL:CP002688EMBL:DQ056670EnsemblPlants:AT5G05150EnsemblPlants:AT5G05150.1
entrez:830397Gene3D:2.130.10.10GeneID:830397Genevisible:Q9FHK8GO:GO:0000045GO:GO:0000422GO:GO:0005774
GO:GO:0005829GO:GO:0006497GO:GO:0015031GO:GO:0019898GO:GO:0032266GO:GO:0034045GO:GO:0034497
GO:GO:0044804GO:GO:0080025Gramene:AT5G05150.1hmmpanther:PTHR11227hmmpanther:PTHR11227:SF25HOGENOM:HOG000217543InParanoid:Q9FHK8
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT5G05150OMA:NERSFAQPaxDb:Q9FHK8Pfam:Q9FHK8
PhylomeDB:Q9FHK8PRIDE:Q9FHK8PRO:PR:Q9FHK8ProteinModelPortal:Q9FHK8Proteomes:UP000006548RefSeq:NP_196134.1SMART:SM00320
SMR:Q9FHK8STRING:3702.AT5G05150.1SUPFAM:SSF50978TAIR:AT5G05150tair10-symbols:ATATG18Etair10-symbols:ATG18Etair10-symbols:G18E
UniGene:At.54728UniProt:Q9FHK8
Coordinates (TAIR10) chr5:-:1524841..1526199
Molecular Weight (calculated) 41671.20 Da
IEP (calculated) 8.47
GRAVY (calculated) 0.04
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSIVSTVRG ILTLSRSETF DSPRDEAKSD LKVLSVAWNQ VCSGFIVGTN HGFNVYSCKP MIKKSISRAP HESGFKVAEM LFLSNLFAFV GNGYNNSEYP
101: PNKVFVWDDY RNCCLSELTF KSEVIAVKLA REHVVVVLKQ NIYVYTFNNL KVDRVIETLM NPKGLCCVTH VESKAVLACP GFHPGQVQVH DLRWNVIKFI
201: KAHDSAIACM TLTLDGSLLA TASTKGTLIR IFNAVDGTLL QEFRRGVERA EIYNVAISSN LKWVAASSEK GTLHVFRLRP DILSFDPASS SSFIRVILPK
301: YLYENERSFA QFSLPASTKF IVGFGSENTV LLVGIDGSFR RCKFDHADGG QMVELEHKYF FSLQETGNTM VGGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)