suba logo
AT5G04960.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.933
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 12 (TAIR:AT3G10710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04960-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IKMIEMBL:AB005245EMBL:BT004297EMBL:BT020587
EMBL:CP002688EnsemblPlants:AT5G04960EnsemblPlants:AT5G04960.1entrez:830378Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:830378
Genevisible:Q9FF78GO:GO:0004857GO:GO:0005618GO:GO:0016021GO:GO:0030599GO:GO:0042545GO:GO:0045330
GO:GO:0045490Gramene:AT5G04960.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF48HOGENOM:HOG000217409
InParanoid:Q9FF78InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT5G04960OMA:KVDPNQNPaxDb:Q9FF78Pfam:PF01095Pfam:PF04043Pfam:Q9FF78
PhylomeDB:Q9FF78PRIDE:Q9FF78PRO:PR:Q9FF78PROSITE:PS00503ProteinModelPortal:Q9FF78Proteomes:UP000006548RefSeq:NP_196115.1
scanprosite:PS00503SMART:SM00856SMR:Q9FF78STRING:3702.AT5G04960.1SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT5G04960
TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.43216UniPathway:UPA00545UniProt:Q9FF78
Coordinates (TAIR10) chr5:+:1461985..1463809
Molecular Weight (calculated) 62173.80 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.24
Length 564 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSYGRLDEH EQAKLEASRK TKKRIAIIAI SSIVLVCIVV GAVVGTTARD NSKKPPTENN GEPISVSVKA LCDVTLHKEK CFETLGSAPN ASRSSPEELF
101: KYAVKVTITE LSKVLDGFSN GEHMDNATSA AMGACVELIG LAVDQLNETM TSSLKNFDDL RTWLSSVGTY QETCMDALVE ANKPSLTTFG ENHLKNSTEM
201: TSNALAIITW LGKIADTVKF RRRRLLETGN AKVVVADLPM MEGRRLLESG DLKKKATIVV AKDGSGKYRT IGEALAEVEE KNEKPTIIYV KKGVYLENVR
301: VEKTKWNVVM VGDGQSKTIV SAGLNFIDGT PTFETATFAV FGKGFMARDM GFINTAGPAK HQAVALMVSA DLSVFYKCTM DAFQDTMYAH AQRQFYRDCV
401: ILGTVDFIFG NAAVVFQKCE ILPRRPMKGQ QNTITAQGRK DPNQNTGISI HNCTIKPLDN LTDIQTFLGR PWKDFSTTVI MKSFMDKFIN PKGWLPWTGD
501: TAPDTIFYAE YLNSGPGAST KNRVKWQGLK TSLTKKEANK FTVKPFIDGN NWLPATKVPF NSDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)