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AT5G04900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:23549413 (2013): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NYC1-like
Curator
Summary (TAIR10)
Encodes a chlorophyll b reducatase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).
Computational
Description (TAIR10)
NYC1-like (NOL); FUNCTIONS IN: oxidoreductase activity, chlorophyll(ide) b reductase activity; INVOLVED IN: chlorophyll catabolic process, PSII associated light-harvesting complex II catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G13250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04900-MONOMERBioCyc:MetaCyc:AT5G04900-MONOMERBioGrid:15651EC:1.1.1.294eggNOG:COG4221eggNOG:ENOG410IQSPEMBL:AB005245
EMBL:AB255027EMBL:AY085229EMBL:BT025238EMBL:CP002688EnsemblPlants:AT5G04900EnsemblPlants:AT5G04900.1entrez:830372
Gene3D:3.40.50.720GeneID:830372Genevisible:Q8LEU3GO:GO:0009507GO:GO:0009535GO:GO:0010304GO:GO:0015996
GO:GO:0034256Gramene:AT5G04900.1gramene_pathway:1.1.1.294gramene_pathway:1.13.12.14gramene_pathway:PWY-5068hmmpanther:PTHR24314hmmpanther:PTHR24314:SF6
HOGENOM:HOG000148138InParanoid:Q8LEU3IntAct:Q8LEU3InterPro:IPR002347InterPro:IPR016040InterPro:IPR020904KEGG:ath:AT5G04900
KO:K13606OMA:KNVVVHNPaxDb:Q8LEU3Pfam:PF00106Pfam:Q8LEU3PhylomeDB:Q8LEU3PRIDE:Q8LEU3
PRINTS:PR00080PRINTS:PR00081PRO:PR:Q8LEU3PROSITE:PS00061ProteinModelPortal:Q8LEU3Proteomes:UP000006548RefSeq:NP_568145.1
scanprosite:PS00061SMR:Q8LEU3STRING:3702.AT5G04900.1SUPFAM:SSF51735TAIR:AT5G04900tair10-symbols:NOLUniGene:At.33057
UniProt:Q8LEU3
Coordinates (TAIR10) chr5:+:1434826..1437194
Molecular Weight (calculated) 38151.20 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.08
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)