suba logo
AT5G04890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:11743111 (2001): extracellular region
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).
Computational
Description (TAIR10)
RESTRICTED TEV MOVEMENT 2 (RTM2); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G20970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:KOG0710EMBL:AB008271EMBL:AF083773
EMBL:AF208051EMBL:CP002688EMBL:FR682046EMBL:FR682048
EMBL:FR682050EMBL:FR682053EMBL:FR682054EMBL:FR682057
EMBL:FR682059EMBL:FR682063EMBL:FR682064EMBL:FR682068
EMBL:FR682073EMBL:FR682075EMBL:GU396190EMBL:GU396196
EMBL:GU396199EMBL:GU396202EMBL:GU396206EnsemblPlants:AT5G04890
EnsemblPlants:AT5G04890.1entrez:830370Gene3D:2.60.40.790GeneID:830370
Genevisible:Q9M670GO:GO:0005886GO:GO:0006952GO:GO:0009615
GO:GO:0016021GO:GO:0046741Gramene:AT5G04890.1hmmpanther:PTHR11527
hmmpanther:PTHR11527:SF140InParanoid:Q9M670InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT5G04890ncoils:CoilOMA:PLANRKW
PANTHER:PTHR11527PaxDb:Q9M670Pfam:PF00011Pfam:Q9M670
Pfscan:PS01031PRIDE:Q9M670PRO:PR:Q9M670PROSITE:PS01031
ProteinModelPortal:Q9M670Proteomes:UP000006548RefSeq:NP_568144.1STRING:3702.AT5G04890.1
SUPFAM:SSF49764TAIR:AT5G04890tair10-symbols:RTM2TMHMM:TMhelix
UniGene:At.7398UniProt:Q9M670
Coordinates (TAIR10) chr5:+:1427217..1428390
Molecular Weight (calculated) 41342.60 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.84
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARQQQKGT GFGVQYEDFV PKSEWKDQPE ATILNIDLTG FAKEQMKVTY VHSSKMIRVT GERPLANRKW SRFNEVFTVP QNCLVDKIHG SFKNNVLTIT
101: MPKETITKVA YLPETSRTEA AALEKAAKLE EKRLLEESRR KEKEEEEAKQ MKKQLLEEKE ALIRKLQEEA KAKEEAEMRK LQEEAKAKEE AAAKKLQEEI
201: EAKEKLEERK LEERRLEERK LEDMKLAEEA KLKKIQERKS VDESGEKEKI LKPEVVYTKS GHVATPKPES GSGLKSGFGG VGEVVKSAEE KLGNLVEKEK
301: KMGKGIMEKI RRKEITSEEK KLMMNVGVAA LVIFALGAYV SYTFCSSSSS SSSSSPSSSS SSTKPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)