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AT5G04850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS60.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G10640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AB008271EMBL:AF370241EMBL:AY142614EMBL:CP002688
EnsemblPlants:AT5G04850EnsemblPlants:AT5G04850.1entrez:830364ExpressionAtlas:Q9FMC5
GeneID:830364GO:GO:0005622GO:GO:0007034Gramene:AT5G04850.1
hmmpanther:PTHR22761hmmpanther:PTHR22761:SF17InterPro:IPR005024ncoils:Coil
Pfam:PF03357PhylomeDB:Q9FMC5Proteomes:UP000006548RefSeq:NP_568143.1
SMR:Q9FMC5TAIR:AT5G04850tair10-symbols:VPS60.2UniGene:At.25106
UniProt:Q9FMC5
Coordinates (TAIR10) chr5:-:1408246..1409806
Molecular Weight (calculated) 26240.00 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.88
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRIFGAKNN KEPPPSIQDA SDRINKRGDS VEEKVKRLDA ELCKYKDQIK RTRPGPALEA IKARAMRVLK QKKMYEGQRD MLYNQTFNLD QVSFAAEGLK
101: DAQQTMTALK SANKELKGMM KTVKIQDIDN LQDDMMDLMD ESSEIQETLG RSYNVPDDID EDDLLGELDA LEADMGNETE ADGVPSYLQP DKEPDLNDEL
201: NLPSAPMGHT GAPPGRAQAE DEWGLPAVPR ASLRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)