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AT5G04830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.905
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:27943495 (2017): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:830362eggNOG:ENOG410IW3ZeggNOG:ENOG410XWZ5EMBL:AB008271
EMBL:AF360335EMBL:AY051070EMBL:CP002688EnsemblPlants:AT5G04830
EnsemblPlants:AT5G04830.1EnsemblPlants:AT5G04830.2entrez:830362Gene3D:3.10.450.50
GeneID:830362GO:GO:0005886Gramene:AT5G04830.1Gramene:AT5G04830.2
hmmpanther:PTHR34213hmmpanther:PTHR34213:SF2HOGENOM:HOG000029842IntAct:Q9FMC7
InterPro:IPR032710KEGG:ath:AT5G04830OMA:HEDWWDKPhylomeDB:Q9FMC7
Proteomes:UP000006548RefSeq:NP_568142.1RefSeq:NP_850766.1STRING:3702.AT5G04830.1
SUPFAM:SSF54427SwissPalm:Q9FMC7TAIR:AT5G04830UniGene:At.25046
UniProt:Q9FMC7
Coordinates (TAIR10) chr5:-:1402294..1403671
Molecular Weight (calculated) 20295.50 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.59
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPARECEGK GACELKSNKR FADKIMPHLL NLYGSSAKAN DFDMYAPNAS FEDPLTHAQG VKQIKSAFYS LPKVFGESKI VEYHIQESET SPGKKEILID
101: NKQHYKIMGR NIDMISLIKL YVEDGKIVRH EDWWDKKPLR NRDTVSFPLV GRVMEMGRRG LMLATHAMMG FGKDPDSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)