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AT5G04550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF668)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT3G23160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH8ZeggNOG:ENOG4111G6CEMBL:AF367313EMBL:AK226972EMBL:AL162875EMBL:AY062477EMBL:AY093103
EMBL:AY093261EMBL:CP002688EnsemblPlants:AT5G04550EnsemblPlants:AT5G04550.1entrez:830334GeneID:830334Gramene:AT5G04550.1
hmmpanther:PTHR31371hmmpanther:PTHR31371:SF5HOGENOM:HOG000238462InterPro:IPR007700InterPro:IPR021864KEGG:ath:AT5G04550ncoils:Coil
OMA:ISYRVEAPfam:PF05003Pfam:PF11961PhylomeDB:Q9LZ71PIR:T48450Proteomes:UP000006548RefSeq:NP_196075.1
TAIR:AT5G04550UniGene:At.27330UniGene:At.67748UniProt:Q9LZ71
Coordinates (TAIR10) chr5:-:1303757..1305556
Molecular Weight (calculated) 67267.50 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.44
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSETWFRNL WRFPKKHDGH KDKAVLGVLA FEVASLLSKL VHLWQSLSDK NVARLRDEIT HSTGIKKLVS EDDDFIVRLI RDEMMENVEN VAKAVARLAR
101: KCNDPKLKCF ENCFSDMMKT GADPYGWQFG WKKMDKKAKK MERFISSNAS LYQETEILAD LEQTFKRMKS NESATDNLLE YQKKVTWKRH EVKNLRDVSL
201: WNRTYDYTVI LLVRSVFTIL SRTKHVFGIS YRVEASDVSS ADSDFIGRSH SVSTILTPVS HKSESSGLPR FASGPLGRFT GPASGSAATR STKMSDFLSG
301: SLSAESPKSG PLVAEKHKRF KFYSGQLGKI TSKSGPLIGM GKNNKKMGQT PERPSISSVK KQLKANRLTQ VGPFKGCMVS HDGITPLSTR ARNGARNSSA
401: EHHILEDNSN SVHVENLTLP SRPKLSDAAP NTLGTACLAL HYANVIIVIE RFVASPHLIG DDARDDLYNM LPASVRTSLR ERLKPYSKNL SSSTVYDPGL
501: AREWTDAMAG ILEWLGPLAH NMIKWQSERS YEHQSLVSRT HIVLAQTLFF ANQQKTEAII TELLVGLNYV WRFGRELNAK ALQECTSSKT LEKCLDTDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)