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AT5G04540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.849
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Myotubularin-like phosphatases II superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Myotubularin-like phosphatases II superfamily; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Myotubularin phosphatase (InterPro:IPR017906), GRAM (InterPro:IPR004182), Myotubularin-related (InterPro:IPR010569); BEST Arabidopsis thaliana protein match is: Myotubularin-like phosphatases II superfamily (TAIR:AT3G10550.1); Has 1724 Blast hits to 1576 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 139; Plants - 41; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04540-MONOMEREC:3.1.3.64EC:3.1.3.95eggNOG:ENOG410XPTUeggNOG:KOG4471EMBL:AK229229EMBL:AL162875
EMBL:CP002688EnsemblPlants:AT5G04540EnsemblPlants:AT5G04540.1entrez:830333Gene3D:2.30.29.30GeneID:830333Genevisible:F4JWB3
GO:GO:0004438GO:GO:0004725GO:GO:0005737GO:GO:0006629GO:GO:0035556GO:GO:0052629Gramene:AT5G04540.1
hmmpanther:PTHR10807hmmpanther:PTHR10807:SF8HOGENOM:HOG000029822InParanoid:F4JWB3InterPro:IPR004182InterPro:IPR010569InterPro:IPR011993
InterPro:IPR016130InterPro:IPR029021InterPro:IPR030564KEGG:ath:AT5G04540KO:K18081ncoils:CoilOMA:CTVEVED
PANTHER:PTHR10807PaxDb:F4JWB3Pfam:F4JWB3Pfam:PF06602Pfscan:PS51339PIR:T48451PRIDE:F4JWB3
PRO:PR:F4JWB3PROSITE:PS00383PROSITE:PS51339ProteinModelPortal:F4JWB3Proteomes:UP000006548Reactome:R-ATH-1660499Reactome:R-ATH-1660516
Reactome:R-ATH-1660517RefSeq:NP_196074.2scanprosite:PS00383SMART:SM00568SMR:F4JWB3STRING:3702.AT5G04540.1SUPFAM:SSF50729
SUPFAM:SSF52799TAIR:AT5G04540UniGene:At.46239UniProt:F4JWB3
Coordinates (TAIR10) chr5:-:1296826..1302299
Molecular Weight (calculated) 92592.50 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.31
Length 833 amino acids
Sequence (TAIR10)
(BLAST)
001: MTALRPLSGR SRSLRCSSEK MEGTGSWDVL EWTKLDSASW SGSYSNLDCL LESERIIFEA CGVILINTDE AGTLLLSNFR ILFLSEGTRK LVPLGTIPFV
101: AIEKFNKLAP KVQSNKYHNN ENAPTRLLQV TGKDMRIVVY GFRPGTKQRH TVVDTLLRCN KPERVWDLYA FTCGPSQFGN TNPKERLLNE YFRLLGKSSQ
201: RASMNMIEDG SFTLSNDLWR ITNLNSNYDL CQSYPFALMV PKSISDEELL QTSTFRARCR LPVISWCHPG SGAVIARSSQ PLVGLMMNMR SNSDEKLVAS
301: FCTQLAGHKG ARRKLYIVDA RPRKNALANG AKGGGSESSS NYLQSEIVFL GIDNIHAMRE SFSRLRDYLD MHGTTSSDGT SSFLRHGGWT WGGGNLSSMS
401: ASVSVLGDSG WLSHIQSILA GVAWIAARVA MESASVLVHC SDGWDRTTQL VSLACLLLDP YYRTFSGFQA LVEKDWLSFG HPFSDRVGMP NVSESGNFEL
501: PIQSSSARSF PSSPVRQSPG SAAAQSSSSS YGLNNYSPIF LQWLDCISQL MRMYPSAFEF SPTFLVDFID CLLSCRFGNF LCNSEKERQQ CGISETCGCI
601: WAYLADLRSS SGTSHVHCNP FYDPSRYDGP LLPPAAALAP TLWPQFHLRW ACPVEPNVTE TEDQCRAMTV KYSEMKKEKE EAERKVDELS SAMESLNEEL
701: LNERDISRAA RESAKRATKE RAVISRAVQS LGCKVKFTRN GDCTVEVEDG PQKCSHSIPQ KQSEDNTTDV SESISSVTEQ NVCEAVCPLR TREGTCRWPD
801: AGCARIGNQF LGLKTNFEAF DNLCVYDSYF TAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)