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AT5G04500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.913
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyltransferase family protein 47
Curator
Summary (TAIR10)
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
Computational
Description (TAIR10)
glycosyltransferase family protein 47; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: embryo, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 971 Blast hits to 969 proteins in 180 species: Archae - 4; Bacteria - 178; Metazoa - 489; Fungi - 8; Plants - 111; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04500-MONOMERCAZy:GT64EC:2.4.1.-eggNOG:ENOG410XQYV
eggNOG:KOG1022EMBL:AL162875EMBL:BT004019EMBL:CP002688
EMBL:KJ138705EnsemblPlants:AT5G04500EnsemblPlants:AT5G04500.1entrez:830329
Gene3D:3.90.550.10GeneID:830329Genevisible:Q84WB7GO:GO:0006024
GO:GO:0006486GO:GO:0015012GO:GO:0016021GO:GO:0016740
GO:GO:0046872Gramene:AT5G04500.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF112
HOGENOM:HOG000240324InParanoid:Q84WB7InterPro:IPR015338InterPro:IPR023296
InterPro:IPR029044KEGG:ath:AT5G04500OMA:IDKGATWPaxDb:Q84WB7
Pfam:PF09258Pfam:Q84WB7PhylomeDB:Q84WB7PIR:T48446
PRIDE:Q84WB7PRO:PR:Q84WB7ProteinModelPortal:Q84WB7Proteomes:UP000006548
RefSeq:NP_196070.2SMR:Q84WB7STRING:3702.AT5G04500.1SUPFAM:SSF53448
SUPFAM:SSF75005TAIR:AT5G04500TMHMM:TMhelixUniGene:At.33113
UniPathway:UPA00378UniProt:Q84WB7
Coordinates (TAIR10) chr5:+:1283604..1286155
Molecular Weight (calculated) 86435.40 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.23
Length 765 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEETTDNTG TISSQKNVAA SGHNHHHRYK YISNYGVGRR FLFFASCFGF YAFVAATYAW FVFPPHIGRT DHVSSSSLGC REDNEGSWSI GVFYGDSPFS
101: LKPIETRNVW RNESGAWPVT NPVITCASFT NSGLPSNFLA DPFLYVQGDT LYLFFETKSP ITMQGDIGAA KSIDKGATWE PLGIALDEAW HLSFPFVFNY
201: NGEIYMMPES NEIGQLNLYR AVNFPLSWKL EKVILKKPLV DSTIVHHEGI YWLIGSDHTG FGAKKNGQLE IWYSSSPLGT WKPHKKNPIY NGKRSIGARN
301: GGRAFLYDGS LYRVGQDCGE NYGKRIRVSK IEVLSKEEYR EVEVPFSLEA SRKGKNSWNG VRQHHFDVKQ LSSGEFIGLV DGDRVTSGDL FHRVILGYAS
401: LAAAISVVIL LGFLLGVVNC IVPSTWCMNY YAGKRTDALL NLETAGLFSE KLRRIGSRLN RVPPFLRGFV KPNSSMGKFT LGVIVILGLL LTCVGVRYIY
501: GGSGAVEPYP FKGHLSQFTL ATMTYDARLW NLKMYVKRYS RCPSVKEIVV IWNKGPPPDL SELDSAVPVR IRVQKQNSLN NRFEIDPLIK TRAVLELDDD
601: IMMPCDDIEK GFRVWREHPE RLVGFYPRFV DQTMTYSAEK FARSHKGYNM ILTGAAFMDV RFAFDMYQSD KAKLGRVFVD EQFNCEDILL NFLYANASGS
701: GKAVEYVRPS LVTIDTSKFS GVAISGNTNQ HYRKRSKCLR RFSDLYGSLV DRRWEFGGRK DGWDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)