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AT5G04470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclin-dependent protein kinase inhibitors
Curator
Summary (TAIR10)
Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.
Computational
Description (TAIR10)
SIAMESE (SIM); BEST Arabidopsis thaliana protein match is: LOSS OF GIANT CELLS FROM ORGANS (TAIR:AT3G10525.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15605eggNOG:ENOG410JK5FeggNOG:ENOG4111BPREMBL:AK175850EMBL:AL162875EMBL:AY085204EMBL:BT009698
EMBL:CP002688EnsemblPlants:AT5G04470EnsemblPlants:AT5G04470.1entrez:830326GeneID:830326Genevisible:Q9LZ78GO:GO:0004861
GO:GO:0005634GO:GO:0010026GO:GO:0042023GO:GO:0045736GO:GO:0045786GO:GO:0045839Gramene:AT5G04470.1
hmmpanther:PTHR33142hmmpanther:PTHR33142:SF1HOGENOM:HOG000153067InParanoid:Q9LZ78IntAct:Q9LZ78KEGG:ath:AT5G04470OMA:SCKRKLM
PaxDb:Q9LZ78Pfam:Q9LZ78PhylomeDB:Q9LZ78PIR:T48443PRIDE:Q9LZ78PRO:PR:Q9LZ78ProteinModelPortal:Q9LZ78
Proteomes:UP000006548RefSeq:NP_196067.1STRING:3702.AT5G04470.1TAIR:AT5G04470tair10-symbols:SIMUniGene:At.25536UniGene:At.74148
UniProt:Q9LZ78
Coordinates (TAIR10) chr5:-:1266893..1267276
Molecular Weight (calculated) 14091.90 Da
IEP (calculated) 10.65
GRAVY (calculated) -0.68
Length 127 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)