AT5G04400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAC domain containing protein 77 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAC domain containing protein 77 (NAC077); FUNCTIONS IN: DNA binding; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 52 (TAIR:AT3G10490.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1241555..1243358 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44811.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.18 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARDSKKAGG ALPAPATAMG NAAAETSLPP GFRFHPSDEE LISYYLKKKV QGKPMRYDEI GEVDICKLEP WDLAVIIFLC FLALDFRYVL KTRDKEWFFF 101: SALDKKTRTG TSMSRATKQG YWKVTGTDGK IRQGGDGKVT IGTMKTLVFH RGRSPNGLGT DWVMNEYHLA KNDEGVPQNN TGSRYAPFLE EEWDDDNGER 201: VAIHVPDDGP LPLCVLNKEA PLPLIQYKRK RRISSSQTTQ DHRSFTETII DSTASAEPLD ISERIALRAL NGMLDDLEKE QEPVVVDGNK INEIQQESQL 301: QRKKLIDLNL KEDAPSPLCV VNKETPSPLK YMIDDLEKEQ EPATKRINDL VLKENDEIVV FREMQERESM KAEMEISFLE AQIDALDRKI DHPHK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)