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AT5G04390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G10470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:BT003885EMBL:BT005031EMBL:CP002688EnsemblPlants:AT5G04390EnsemblPlants:AT5G04390.1
entrez:830318GeneID:830318GO:GO:0046872Gramene:AT5G04390.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF182HOGENOM:HOG000238452
IntAct:Q84K31InterPro:IPR007087InterPro:IPR015880KEGG:ath:AT5G04390OMA:QDIANCLPfam:PF13912Pfscan:PS50157
PhylomeDB:Q84K31PROSITE:PS00028PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_196059.1scanprosite:PS00028SMART:SM00355
SMR:Q84K31STRING:3702.AT5G04390.1SUPFAM:SSF57667TAIR:AT5G04390UniGene:At.33131UniProt:Q84K31
Coordinates (TAIR10) chr5:+:1239166..1240254
Molecular Weight (calculated) 39796.20 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.74
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)