AT5G04360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : limit dextrinase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
limit dextrinase (LDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1); Has 6260 Blast hits to 6253 proteins in 1613 species: Archae - 73; Bacteria - 5462; Metazoa - 45; Fungi - 1; Plants - 262; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1221566..1228399 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107072.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 965 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALTLTPTSS VHLLSSISVA RPRIFAADFN LRSRWRRRRP VTSISNFRLR LPSKTSLHCL CSSSSASSPM SLEVSSPNSQ FLDCLIYSRA YWVTQGVIAW 101: NVDVGEGSCY FYASKSAGLS FSEDGIDGYD LRIKLEAESG SLPADVIEKF PHIRNYKSFK VPKDLDIRDL VKSQLAVVCF DAEGRLIQGT GLQLPGVLDE 201: LFSYDGPLGA HFTPEGVSLH LWAPTAQAVS VCIYKNPLDK SPMEICPLKE ANGVWSTEGA CSWGGCYYVY KVSVYHPSTM KLETCYANDP YARGLSADGR 301: KTFLVNLDSD DLKPEGWDNL ADKKPCLRSF SDISIYELHV RDFSANDETV EPENRGGYLA FTSKDSAGVK HLQKLVDAGL THLHLLPTFQ FGDVDDEKEN 401: WKSVDTSLLE GLRPDSTEAQ ARITEIQNDD GYNWGYNPVL WGVPKGSYAS DPTGPCRIIE FRKMVQALNC TGLNVVLDVV YNHLHASGPH DKESVLDKIV 501: PGYYLRRNSD GFIENSTCVN NTASEHYMVD RLIRDDLLNW VVNYKVDGFR FDLMGHIMKA TIVNAKSAIG SLRKETDGVD GSRIYLYGEG WNFGEVAENG 601: RGINASQFNL GGTGIGSFND RIRDATLGGS PFGHPLQQGF ITGLLLQPNA HDHGSEATQE LMLSTAKNHI QTGMAANLKD YMLTNHEGKE VKGSEVLMHD 701: ATPVAYASLP TETINYVSAH DNETLFDIIS LKTPMEISVD ERCRINHLAS SMIALSQGIP FFHAGDEILR SKSLDRDSYN SGDWFNRLDF SYSSNNWGVG 801: LPPKGKNEHN WPLIKPRLQD PSFKPKSSHI VATLHNFLDL LRIRYSSPLF RLDTARAIQE RVRFHNTGPS SIPGAIVMSI EDGHRGIPSV SQIDPIYSLI 901: VVIFNARPSE FSYPSPALKD RKLELHPVQV MSADEIVKKS VYDSFSGGFT VPARTTTVFV ESRNG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)