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AT5G04290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : kow domain-containing transcription factor 1
Curator
Summary (TAIR10)
Encodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs. Interacts with AGO4. Required for RNA-directed DNA methylation.
Computational
Description (TAIR10)
kow domain-containing transcription factor 1 (KTF1); CONTAINS InterPro DOMAIN/s: KOW (InterPro:IPR005824), Transcription elongation factor Spt5, NGN domain (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: global transcription factor group A2 (TAIR:AT4G08350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5164eggNOG:KOG1999EMBL:B61983EMBL:B61984EMBL:CP002688EnsemblPlants:AT5G04290EnsemblPlants:AT5G04290.1
entrez:830308GeneID:830308Genevisible:F4JW79GO:GO:0003677GO:GO:0003682GO:GO:0003723GO:GO:0005654
GO:GO:0006306GO:GO:0006342GO:GO:0016458GO:GO:0030422GO:GO:0080188Gramene:AT5G04290.1hmmpanther:PTHR11125
hmmpanther:PTHR11125:SF8InParanoid:F4JW79IntAct:F4JW79InterPro:IPR005100InterPro:IPR005824iPTMnet:F4JW79KEGG:ath:AT5G04290
OMA:SWDKADGPaxDb:F4JW79Pfam:PF03439PRIDE:F4JW79PRO:PR:F4JW79ProteinModelPortal:F4JW79Proteomes:UP000006548
Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-674695Reactome:R-ATH-72086Reactome:R-ATH-77075RefSeq:NP_196049.1SMART:SM00739
SMR:F4JW79STRING:3702.AT5G04290.1TAIR:AT5G04290tair10-symbols:KTF1tair10-symbols:SPT5LUniGene:At.54715UniProt:F4JW79
Coordinates (TAIR10) chr5:+:1196069..1202653
Molecular Weight (calculated) 158046.00 Da
IEP (calculated) 5.35
GRAVY (calculated) -1.08
Length 1493 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)