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AT5G04260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WCRKC thioredoxin 2
Curator
Summary (TAIR10)
Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif.
Computational
Description (TAIR10)
WCRKC thioredoxin 2 (WCRKC2); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: WCRKC thioredoxin 1 (TAIR:AT5G06690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:KOG0907EMBL:AL391716EMBL:AY063850EMBL:AY117290EMBL:CP002688EnsemblPlants:AT5G04260
EnsemblPlants:AT5G04260.1entrez:830305Gene3D:3.40.30.10GeneID:830305Genevisible:Q8VZT6GO:GO:0000103GO:GO:0006457
GO:GO:0006662GO:GO:0009570GO:GO:0015035GO:GO:0016671GO:GO:0034599GO:GO:0045454GO:GO:0055114
Gramene:AT5G04260.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF297HOGENOM:HOG000005971InParanoid:Q8VZT6InterPro:IPR005746InterPro:IPR012336
InterPro:IPR013766KEGG:ath:AT5G04260OMA:VIVWMAAPANTHER:PTHR10438PaxDb:Q8VZT6Pfam:PF00085Pfam:Q8VZT6
Pfscan:PS51352PhylomeDB:Q8VZT6PRIDE:Q8VZT6PRO:PR:Q8VZT6PROSITE:PS51352ProteinModelPortal:Q8VZT6Proteomes:UP000006548
RefSeq:NP_196046.2SMR:Q8VZT6STRING:3702.AT5G04260.1SUPFAM:SSF52833TAIR:AT5G04260tair10-symbols:WCRKC2UniGene:At.33154
UniGene:At.71244UniProt:Q8VZT6
Coordinates (TAIR10) chr5:-:1178901..1180022
Molecular Weight (calculated) 21837.30 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.29
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEIVNLSSS LRSLNPKISP LVPPYRQTSS SFSRPRNFKY HSFTDKICLA AERIRAVDIQ KQDGGLQELD DSPVSVELGP ICGESHFDQV MEDAQKLGES
101: VVIVWMAAWC RKCIYLKPKL EKLAAEFYPR LRFYHVDVNA VPYRLVSRAG VTKMPTIQLW RDGQKQAEVI GGHKAHFVVN EVREMIENDS IT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)