AT5G04250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.953 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G03330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1176397..1178492 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39233.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGYEPDPDAL RWGLHDLEVC TLTNAGSCSS VTRYESGGGG TQGYVREGYN QPVTGYVDND AVIAQFYQDE LSRVARAEAS GINSLSPTSV VAQDWPHPHQ 101: GQENQGEAID ITQESDILHN HNGNMEDKNV ARIRFEGGQS SPSRDDDSVC SVEIEEESWS EVGKRLNQMI PIAHVPKING ELPSEDEQIS DHERLFQRLQ 201: LYGLVENKIE GDGNCQFRSL SDQLYRSPEH HNFVREQVVN QLAYNREIYE GYVPMAYNDY LKAMKRNGEW GDHVTLQAAA DLFGVRMFVI TSFKDTCYIE 301: ILPHFQKSNR LICLSFWAEV HYNSIYPEGE LPIPEGKKKK KYWVF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)