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AT5G04150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BHLH101; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15573EMBL:AJ519810EMBL:AL391716EMBL:CP002688
EMBL:DQ446915EMBL:DQ653262EnsemblPlants:AT5G04150EnsemblPlants:AT5G04150.1
entrez:830293Gene3D:4.10.280.10GeneID:830293Genevisible:Q9FYE6
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0010106GO:GO:0055072Gramene:AT5G04150.1
hmmpanther:PTHR13935hmmpanther:PTHR13935:SF41HOGENOM:HOG000238662InParanoid:Q9FYE6
InterPro:IPR011598InterPro:IPR015660KEGG:ath:AT5G04150ncoils:Coil
OMA:QRIAANWPANTHER:PTHR13935PaxDb:Q9FYE6Pfam:PF00010
Pfam:Q9FYE6Pfscan:PS50888PhylomeDB:Q9FYE6PRIDE:Q9FYE6
PRO:PR:Q9FYE6PROSITE:PS50888ProteinModelPortal:Q9FYE6Proteomes:UP000006548
RefSeq:NP_196035.1SMART:SM00353SMR:Q9FYE6STRING:3702.AT5G04150.1
SUPFAM:SSF47459TAIR:AT5G04150tair10-symbols:BHLH101UniGene:At.33170
UniProt:Q9FYE6
Coordinates (TAIR10) chr5:-:1138559..1139476
Molecular Weight (calculated) 27718.20 Da
IEP (calculated) 10.35
GRAVY (calculated) -0.64
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYPWLQSQV HSFSPTLHFP SFLHPLDDSK SHNINLHHMS LSHSNNTNSN NNNYQEEDRG AVVLEKKLNH NASERDRRRK LNALYSSLRA LLPLSDQKRK
101: LSIPMTVARV VKYIPEQKQE LQRLSRRKEE LLKRISRKTH QEQLRNKAMM DSIDSSSSQR IAANWLTDTE IAVQIATSKW TSVSDMLLRL EENGLNVISV
201: SSSVSSTARI FYTLHLQMRG DCKVRLEELI NGMLLGLRQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)