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AT5G04140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate synthase 1
Curator
Summary (TAIR10)
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.
Computational
Description (TAIR10)
glutamate synthase 1 (GLU1); FUNCTIONS IN: protein binding, glutamate synthase (ferredoxin) activity; INVOLVED IN: positive regulation of glycine hydroxymethyltransferase activity, response to light stimulus, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 2 (TAIR:AT2G41220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04140-MONOMERBioCyc:ARA:GQT-2064-MONOMERBioGrid:15572BRENDA:1.4.7.1EC:1.4.7.1eggNOG:COG0067eggNOG:COG0069
eggNOG:COG0070eggNOG:KOG0399EMBL:AL391716EMBL:CP002688EMBL:U39287EMBL:Y09667EnsemblPlants:AT5G04140
EnsemblPlants:AT5G04140.1entrez:830292ExpressionAtlas:Q9ZNZ7Gene3D:2.160.20.60Gene3D:3.20.20.70Gene3D:3.60.20.10GeneID:830292
Genevisible:Q9ZNZ7GO:GO:0005739GO:GO:0005759GO:GO:0006537GO:GO:0009416GO:GO:0009507GO:GO:0009570
GO:GO:0009744GO:GO:0009853GO:GO:0009941GO:GO:0016020GO:GO:0016041GO:GO:0019676GO:GO:0046872
GO:GO:0048046GO:GO:0051538GO:GO:0080114GO:GO:0097054gramene_pathway:1.4.7.1gramene_pathway:PWY-3282gramene_pathway:PWY-4341
gramene_pathway:PWY-6549hmmpanther:PTHR11938hmmpanther:PTHR11938:SF94HOGENOM:HOG000031558InParanoid:Q9ZNZ7IntAct:Q9ZNZ7InterPro:IPR002489
InterPro:IPR002932InterPro:IPR006982InterPro:IPR013785InterPro:IPR017932InterPro:IPR029055iPTMnet:Q9ZNZ7KEGG:ath:AT5G04140
KO:K00284OMA:TILDINYPaxDb:Q9ZNZ7Pfam:PF00310Pfam:PF01493Pfam:PF01645Pfam:PF04898
Pfam:Q9ZNZ7Pfscan:PS51278PRIDE:Q9ZNZ7PRO:PR:Q9ZNZ7PROSITE:PS51278ProteinModelPortal:Q9ZNZ7Proteomes:UP000006548
RefSeq:NP_568134.1RefSeq:NP_850763.1STRING:3702.AT5G04140.2SUPFAM:SSF51395SUPFAM:SSF56235SUPFAM:SSF69336TAIR:AT5G04140
tair10-symbols:FD-GOGATtair10-symbols:GLS1tair10-symbols:GLU1tair10-symbols:GLUSUniGene:At.21961UniGene:At.67926UniPathway:UPA00045
UniPathway:UPA00634UniProt:Q9ZNZ7
Coordinates (TAIR10) chr5:+:1130031..1138186
Molecular Weight (calculated) 176762.00 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.14
Length 1622 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAMQSLSPVP KLLSTTPSSV LSSDKNFFFV DFVGLYCKSK RTRRRLRGDS SSSSRSSSSL SRLSSVRAVI DLERVHGVSE KDLSSPSALR PQVANLEDIL
0101: SERGACGVGF IANLDNIPSH GVVKDALIAL GCMEHRGGCG ADNDSGDGSG LMSSIPWDFF NVWAKEQSLA PFDKLHTGVG MIFLPQDDTF MQEAKQVIEN
0201: IFEKEGLQVL GWREVPVNVP IVGKNARETM PNIQQVFVKI AKEDSTDDIE RELYICRKLI ERAVATESWG TELYFCSLSN QTIVYKGMLR SEALGLFYLD
0301: LQNELYESPF AIYHRRYSTN TSPRWPLAQP MRFLGHNGEI NTIQGNLNWM QSREASLKAA VWNGRENEIR PFGNPRGSDS ANLDSAAEIM IRSGRTPEEA
0401: LMILVPEAYK NHPTLSVKYP EVVDFYDYYK GQMEAWDGPA LLLFSDGKTV GACLDRNGLR PARYWRTSDN FVYVASEVGV VPVDEAKVTM KGRLGPGMMI
0501: AVDLVNGQVY ENTEVKKRIS SFNPYGKWIK ENSRFLKPVN FKSSTVMENE EILRSQQAFG YSSEDVQMVI ESMASQGKEP TFCMGDDIPL AGLSQRPHML
0601: YDYFKQRFAQ VTNPAIDPLR EGLVMSLEVN IGKRGNILEL GPENASQVIL SNPVLNEGAL EELMKDQYLK PKVLSTYFDI RKGVEGSLQK ALYYLCEAAD
0701: DAVRSGSQLL VLSDRSDRLE PTRPSIPIML AVGAVHQHLI QNGLRMSASI VADTAQCFST HHFACLVGYG ASAVCPYLAL ETCRQWRLSN KTVAFMRNGK
0801: IPTVTIEQAQ KNYTKAVNAG LLKILSKMGI SLLSSYCGAQ IFEIYGLGQD VVDLAFTGSV SKISGLTFDE LARETLSFWV KAFSEDTTKR LENFGFIQFR
0901: PGGEYHSNNP EMSKLLHKAV REKSETAYAV YQQHLSNRPV NVLRDLLEFK SDRAPIPVGK VEPAVAIVQR FCTGGMSLGA ISRETHEAIA IAMNRIGGKS
1001: NSGEGGEDPI RWKPLTDVVD GYSPTLPHLK GLQNGDIATS AIKQVASGRF GVTPTFLVNA DQLEIKVAQG AKPGEGGQLP GKKVSAYIAR LRSSKPGVPL
1101: ISPPPHHDIY SIEDLAQLIF DLHQINPNAK VSVKLVAEAG IGTVASGVAK GNADIIQISG HDGGTGASPI SSIKHAGGPW ELGLTETHQT LIANGLRERV
1201: ILRVDGGLKS GVDVLMAAAM GADEYGFGSL AMIATGCVMA RICHTNNCPV GVASQREELR ARFPGVPGDL VNYFLYVAEE VRGILAQLGY NSLDDIIGRT
1301: ELLRPRDISL VKTQHLDLSY LLSSVGTPSL SSTEIRKQEV HTNGPVLDDD ILADPLVIDA IENEKVVEKT VKICNVDRAA CGRVAGVIAK KYGDTGFAGQ
1401: VNLTFLGSAG QSFGCFLIPG MNIRLIGESN DYVGKGMAGG EIVVTPVEKI GFVPEEATIV GNTCLYGATG GQIFARGKAG ERFAVRNSLA EAVVEGTGDH
1501: CCEYMTGGCV VVLGKVGRNV AAGMTGGLAY LLDEDDTLLP KINREIVKIQ RVTAPAGELQ LKSLIEAHVE KTGSSKGATI LNEWEKYLPL FWQLVPPSEE
1601: DTPEASAAYV RTSTGEVTFQ SA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)