AT5G04110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA GYRASE B3 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA GYRASE B3 (GYRB3); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 21414 Blast hits to 21375 proteins in 6002 species: Archae - 105; Bacteria - 17678; Metazoa - 58; Fungi - 26; Plants - 200; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1110757..1114112 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60939.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSGTVKRVS PLQDIKLRVQ ITVSLEMEDN DPNKEYLYAK GLSEFVTWLN ADKKPLHDVL GFRKEINGTT INIALQWCVD GYSNKILGYA NGIRTMDGGT 101: YIDGVKASIT RTLNSLVEKS KLVEDKDIIF TEEHVMEGLT CIVSVIVPKP EFEGQTQRLG NPNVREIVDQ SVQECLMESF ELHPDVFESI MSKSYNAYKT 201: DLAVKRARDV YSSESVAMVC AIESIPMKLT NSSSETSETF IGRGVSSGGA AKHDSDRCFK NKRTWEQPWS DDAVSTAPGE SSENTSGSSF EKKSKKPKSS 301: VSSSHLCFSS RQSADDANSP SPKDVSNKTP KDVTHGSNKD VSNKTSKDVI THGSNKTRPA IPIGPRFQAE IPVWIAPTKK GKFYGSPGDS NTLRWLGTGV 401: WPTYSLKKTV HSKKVGEGRS DSCSCASPRS TNCIKRHKKE AQELLEKEIN RAFSTWEFDQ MGEEIVLKSW TAKEERRFEA LVKKNPLSSS DGFWEFASNA 501: FPQKSKKDLL SYYYNVFLIK RMRLLKSSAA NNIDSDDDHY DDFLAG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)