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AT5G04080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6VUeggNOG:ENOG410ZC80EMBL:BT010917EMBL:BT011498
EMBL:CP002688EnsemblPlants:AT5G04080EnsemblPlants:AT5G04080.1entrez:830287
ExpressionAtlas:Q6NN03GeneID:830287GO:GO:0005886Gramene:AT5G04080.1
hmmpanther:PTHR31568HOGENOM:HOG000077440InterPro:IPR028144OMA:EQPGQDK
Pfam:PF12734PhylomeDB:Q6NN03Proteomes:UP000006548RefSeq:NP_196028.2
TAIR:AT5G04080UniGene:At.33179UniProt:Q6NN03
Coordinates (TAIR10) chr5:+:1104815..1105186
Molecular Weight (calculated) 7322.83 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.84
Length 63 amino acids
Sequence (TAIR10)
(BLAST)
1: MQDMRDQNPP QGYPAAEQVS EQPGQDKKKK KPRFFETKQK GDRGFIEGCL FALCCCWICE MCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)