AT5G04050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-directed DNA polymerase (reverse transcriptase) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-directed DNA polymerase (reverse transcriptase); FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G74350.1); Has 3461 Blast hits to 3086 proteins in 1121 species: Archae - 3; Bacteria - 2166; Metazoa - 4; Fungi - 43; Plants - 1152; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1096092..1097894 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69604.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||
| Length | 600 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLRLRVHSF YNRGISFLVS SSLRNLSTAS SLFLNSDQTI TEPLVKSELE ALVLKQYSHG KFYSLVKNAV SLPCVLLAAC QNLSLSANSS GDLADRVSRR 101: FSIEEMGREI REGRFDIRSC CVEFISSSLV LPNLKLKVLI EAIRMVLEIV YDDRFATFSY GGRVGMGRHT AIRYLKNSVE NPRWWFRVSF AREMFEERNV 201: DILCGFVGEK INDVMLIEMI KKLFEFGILK IELGGCNSGR GFPQECGLCS ILINVYFDGL DKEIQDLRLK MKVKNPRVGT GDEESTGNVF FKPVNIYAVR 301: YLDEILVITS GSKMLTMDLK KRIVDILEQR LELRVDRLNT SIHSAVSEKI NFLGMYLQAV PPSVLRPPKS EKAVRAMKKY QRQKDVRKLE LRNARERNRK 401: TLGLKIFRHV LKKIKQSNGF KFEGEIENEV RDIFQSWGEE VMQDFMGSLE ERWKWHWLLT RGDFLSLRHI REKLPQDLID AYDEFQEQVD KHLAPTQAKK 501: VLEDEERRVE EEEEQRYAER TVEDLTKLCM KVSAPEELVR KAIKLVGFTN SMGRPRPIIH LVTLEDSDII KWYAGVGRKW LDFFCCCHNY KMVKSLVRII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)