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AT5G04040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Patatin-like phospholipase family protein
Curator
Summary (TAIR10)
Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type.
Computational
Description (TAIR10)
SUGAR-DEPENDENT1 (SDP1); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Protein of unknown function DUF3336 (InterPro:IPR021771), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: sugar-dependent 1-like (TAIR:AT3G57140.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04040-MONOMERBioCyc:MetaCyc:AT5G04040-MONOMEREC:3.1.1.3eggNOG:COG1752eggNOG:KOG2214EMBL:AK221922EMBL:AL162873
EMBL:AY136470EMBL:CP002688EnsemblPlants:AT5G04040EnsemblPlants:AT5G04040.1entrez:830283GeneID:830283Genevisible:Q9LZA6
GO:GO:0004806GO:GO:0006071GO:GO:0012511GO:GO:0016021GO:GO:0019433Gramene:AT5G04040.1gramene_pathway:3.1.1.3
gramene_pathway:LIPAS-PWYhmmpanther:PTHR14226hmmpanther:PTHR14226:SF30HOGENOM:HOG000238293InParanoid:Q9LZA6InterPro:IPR002641InterPro:IPR016035
InterPro:IPR021771iPTMnet:Q9LZA6KEGG:ath:AT5G04040KO:K14674OMA:GWLHPRDPaxDb:Q9LZA6Pfam:PF01734
Pfam:PF11815Pfam:Q9LZA6PhylomeDB:Q9LZA6PIR:T48431PRIDE:Q9LZA6PRO:PR:Q9LZA6ProteinModelPortal:Q9LZA6
Proteomes:UP000006548RefSeq:NP_196024.1SMR:Q9LZA6STRING:3702.AT5G04040.1SUPFAM:SSF52151TAIR:AT5G04040tair10-symbols:SDP1
UniGene:At.24923UniProt:Q9LZA6
Coordinates (TAIR10) chr5:+:1090346..1093003
Molecular Weight (calculated) 92097.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.28
Length 825 amino acids
Sequence (TAIR10)
(BLAST)
001: MDISNEASVD PFSIGPSSIM GRTIAFRVLF CRSMSQLRRD LFRFLLHWFL RFKLTVSPFV SWFHPRNPQG ILAVVTIIAF VLKRYTNVKI KAEMAYRRKF
101: WRNMMRTALT YEEWAHAAKM LEKETPKMNE SDLYDEELVK NKLQELRHRR QEGSLRDIMF CMRADLVRNL GNMCNSELHK GRLQVPRHIK EYIDEVSTQL
201: RMVCNSDSEE LSLEEKLSFM HETRHAFGRT ALLLSGGASL GAFHVGVVRT LVEHKLLPRI IAGSSVGSII CAVVASRSWP ELQSFFENSL HSLQFFDQLG
301: GVFSIVKRVM TQGALHDIRQ LQCMLRNLTS NLTFQEAYDM TGRILGITVC SPRKHEPPRC LNYLTSPHVV IWSAVTASCA FPGLFEAQEL MAKDRSGEIV
401: PYHPPFNLDP EVGTKSSSGR RWRDGSLEVD LPMMQLKELF NVNHFIVSQA NPHIAPLLRL KDLVRAYGGR FAAKLAHLVE MEVKHRCNQV LELGFPLGGL
501: AKLFAQEWEG DVTVVMPATL AQYSKIIQNP THVELQKAAN QGRRCTWEKL SAIKSNCGIE LALDDSVAIL NHMRRLKKSA ERAATATSSS HHGLASTTRF
601: NASRRIPSWN VLARENSTGS LDDLVTDNNL HASSGRNLSD SETESVELSS WTRTGGPLMR TASANKFIDF VQSLDIDIAL VRGFSSSPNS PAVPPGGSFT
701: PSPRSIAAHS DIESNSNSNN LGTSTSSITV TEGDLLQPER TSNGFVLNVV KRENLGMPSI GNQNTELPES VQLDIPEKEM DCSSVSEHEE DDNDNEEEHN
801: GSSLVTVSSE DSGLQEPVSG SVIDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)