AT5G04040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.579 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Patatin-like phospholipase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUGAR-DEPENDENT1 (SDP1); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Protein of unknown function DUF3336 (InterPro:IPR021771), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: sugar-dependent 1-like (TAIR:AT3G57140.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1090346..1093003 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92097.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 825 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDISNEASVD PFSIGPSSIM GRTIAFRVLF CRSMSQLRRD LFRFLLHWFL RFKLTVSPFV SWFHPRNPQG ILAVVTIIAF VLKRYTNVKI KAEMAYRRKF 101: WRNMMRTALT YEEWAHAAKM LEKETPKMNE SDLYDEELVK NKLQELRHRR QEGSLRDIMF CMRADLVRNL GNMCNSELHK GRLQVPRHIK EYIDEVSTQL 201: RMVCNSDSEE LSLEEKLSFM HETRHAFGRT ALLLSGGASL GAFHVGVVRT LVEHKLLPRI IAGSSVGSII CAVVASRSWP ELQSFFENSL HSLQFFDQLG 301: GVFSIVKRVM TQGALHDIRQ LQCMLRNLTS NLTFQEAYDM TGRILGITVC SPRKHEPPRC LNYLTSPHVV IWSAVTASCA FPGLFEAQEL MAKDRSGEIV 401: PYHPPFNLDP EVGTKSSSGR RWRDGSLEVD LPMMQLKELF NVNHFIVSQA NPHIAPLLRL KDLVRAYGGR FAAKLAHLVE MEVKHRCNQV LELGFPLGGL 501: AKLFAQEWEG DVTVVMPATL AQYSKIIQNP THVELQKAAN QGRRCTWEKL SAIKSNCGIE LALDDSVAIL NHMRRLKKSA ERAATATSSS HHGLASTTRF 601: NASRRIPSWN VLARENSTGS LDDLVTDNNL HASSGRNLSD SETESVELSS WTRTGGPLMR TASANKFIDF VQSLDIDIAL VRGFSSSPNS PAVPPGGSFT 701: PSPRSIAAHS DIESNSNSNN LGTSTSSITV TEGDLLQPER TSNGFVLNVV KRENLGMPSI GNQNTELPES VQLDIPEKEM DCSSVSEHEE DDNDNEEEHN 801: GSSLVTVSSE DSGLQEPVSG SVIDA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)