AT5G04020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : calmodulin binding | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1081980..1086546 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 169303.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.37 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||
| Length | 1495 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSNPMFPEKW EESSTSKSSR RVHKRRERKM WKKPIKLSRF PSFGFSGSDF TLDQIPAIFS GYTAESEDSS SSEMSDDSRT YSKSSDENEE LDQASLTICS 0101: ERPRSVKRRA KSKSISRISS MKVLRRQSTR TLYGAGQRLK KMRSMKRLTS NSRQILRKKN LDRGDFGLLQ PHYLRPTSSS ASKNVENNQK NLGAARLKRI 0201: ASLRYNGLLK ATCSSAMKGS SSKRSNDVCT YRYCSLHGRR HSHAADNNAG VPSLKRFVSM RRKFMNRQKS VNRRLVLLKR TLSRKRGPLG GRVVTDQESK 0301: EVDDNVDGDS DEEVFEEEVS SSVDGGNDNE SIGRSSETVM VDVDDNVDRG MDAMETVASK VQESKTETVG ATLWRAICEQ TVTGHDHDDG KVDGTTSDGT 0401: VGDNEEVCRE GSSGELREED GKKTEYVWNE TVTLVKQAFD EILAEITDDD SSDDISMTKD EALEVGLGEE DVGADSSDSS CSDMQPVIER DTHLSVIAST 0501: FHMRDEFGHQ RGPKKWSYLK RVILLKRFLK SLDRKERRKL SDGKESETIM RLRRELVGER KNAEEWMLDH ALRQVISTLA PSQKKKVKHL VKAFESLIPM 0601: DGGSRGHDDL VSPAREENET VNSQTQTILR DNKDATDILE VSPAKDLEET NLTCEASSFL SIDMKSDEEN ETVNSPTIWR DNEDTTDLLE VVPAKDLEET 0701: NLTSESSSSL CIGMKSDEAL ESTADASLCN HLAVEEEVDG LALGSFIEEE EKKGESEKQN LSTWRNLIQK HMVMRDNSEG NRNETEQEHK WSYGTDQMTG 0801: IDDANAAAVK SIQLAFETIL SEIPDSSSDE ESVSESSNSL KEEKEHQGET KRSWNSLRKV ILLKRFVKSL EKVQVPNPRK MRNLPVESAF EAENVFLRHR 0901: SIMEGTRTEG EEMMLDYALR QAISRLAPIQ RKKVDLLVQA FDIVLDGHDT PKQTKNSDTP RNNDETKEGK PRVEEGCEVN KDEQKIKNVF ARFQVHQKDL 1001: KGEEEVHNTP KESRNLPPIR NFKQRIVVEK GKDSRMWKLI YKHMVTEKEG IDSANAESVA SVESEYDDEA GGLQIDARRS GTVTLVREAL EKILSEIPDN 1101: SSDDQSMDSD ITTEQELFER NSQVSEEKSE VSSATFKPKF TEKRVKGWNN VKKVILLKRF VSDLGSLTRL SPKTPRVLPW EPDPETEKIR LRHQEIGGKR 1201: NSEEWMLDYA LRQAISTLAP SQKRKVSLLA QAFDTISLQD MGSGSTPGSA ASSRNISRQS SISSMAAHYE NEANAEIIRG KLRNLQEDLK ESAKLDGVSK 1301: DLEEKQQCSS LWRILCKQME DNEKNQTLPE ETRKEEEEEE LKEDTSVDGE KMELYQTEAV ELLGEVIDGI SLEESQDQNL NNEETRQKSE TLQVSKVRID 1401: RWSNLKRAIL LRRFVKALEN VRKFNPREPR FLPPNPEVEA EKVNLRHQET QNKKNGDEWM VDNALQGVVS KLTPARKLKV QLLVQAFESL SATGN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)