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AT5G04020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXVReggNOG:ENOG41118N1EMBL:AL162873EMBL:CP002688EnsemblPlants:AT5G04020EnsemblPlants:AT5G04020.1entrez:830281
GeneID:830281GO:GO:0005886Gramene:AT5G04020.1hmmpanther:PTHR33923hmmpanther:PTHR33923:SF3HOGENOM:HOG000153187InterPro:IPR012417
KEGG:ath:AT5G04020OMA:RNSEEWMPfam:PF07839PIR:T48429Proteomes:UP000006548RefSeq:NP_196022.1SMART:SM01054
STRING:3702.AT5G04020.1TAIR:AT5G04020UniGene:At.33187UniProt:Q9LZA8
Coordinates (TAIR10) chr5:-:1081980..1086546
Molecular Weight (calculated) 169303.00 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.88
Length 1495 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSNPMFPEKW EESSTSKSSR RVHKRRERKM WKKPIKLSRF PSFGFSGSDF TLDQIPAIFS GYTAESEDSS SSEMSDDSRT YSKSSDENEE LDQASLTICS
0101: ERPRSVKRRA KSKSISRISS MKVLRRQSTR TLYGAGQRLK KMRSMKRLTS NSRQILRKKN LDRGDFGLLQ PHYLRPTSSS ASKNVENNQK NLGAARLKRI
0201: ASLRYNGLLK ATCSSAMKGS SSKRSNDVCT YRYCSLHGRR HSHAADNNAG VPSLKRFVSM RRKFMNRQKS VNRRLVLLKR TLSRKRGPLG GRVVTDQESK
0301: EVDDNVDGDS DEEVFEEEVS SSVDGGNDNE SIGRSSETVM VDVDDNVDRG MDAMETVASK VQESKTETVG ATLWRAICEQ TVTGHDHDDG KVDGTTSDGT
0401: VGDNEEVCRE GSSGELREED GKKTEYVWNE TVTLVKQAFD EILAEITDDD SSDDISMTKD EALEVGLGEE DVGADSSDSS CSDMQPVIER DTHLSVIAST
0501: FHMRDEFGHQ RGPKKWSYLK RVILLKRFLK SLDRKERRKL SDGKESETIM RLRRELVGER KNAEEWMLDH ALRQVISTLA PSQKKKVKHL VKAFESLIPM
0601: DGGSRGHDDL VSPAREENET VNSQTQTILR DNKDATDILE VSPAKDLEET NLTCEASSFL SIDMKSDEEN ETVNSPTIWR DNEDTTDLLE VVPAKDLEET
0701: NLTSESSSSL CIGMKSDEAL ESTADASLCN HLAVEEEVDG LALGSFIEEE EKKGESEKQN LSTWRNLIQK HMVMRDNSEG NRNETEQEHK WSYGTDQMTG
0801: IDDANAAAVK SIQLAFETIL SEIPDSSSDE ESVSESSNSL KEEKEHQGET KRSWNSLRKV ILLKRFVKSL EKVQVPNPRK MRNLPVESAF EAENVFLRHR
0901: SIMEGTRTEG EEMMLDYALR QAISRLAPIQ RKKVDLLVQA FDIVLDGHDT PKQTKNSDTP RNNDETKEGK PRVEEGCEVN KDEQKIKNVF ARFQVHQKDL
1001: KGEEEVHNTP KESRNLPPIR NFKQRIVVEK GKDSRMWKLI YKHMVTEKEG IDSANAESVA SVESEYDDEA GGLQIDARRS GTVTLVREAL EKILSEIPDN
1101: SSDDQSMDSD ITTEQELFER NSQVSEEKSE VSSATFKPKF TEKRVKGWNN VKKVILLKRF VSDLGSLTRL SPKTPRVLPW EPDPETEKIR LRHQEIGGKR
1201: NSEEWMLDYA LRQAISTLAP SQKRKVSLLA QAFDTISLQD MGSGSTPGSA ASSRNISRQS SISSMAAHYE NEANAEIIRG KLRNLQEDLK ESAKLDGVSK
1301: DLEEKQQCSS LWRILCKQME DNEKNQTLPE ETRKEEEEEE LKEDTSVDGE KMELYQTEAV ELLGEVIDGI SLEESQDQNL NNEETRQKSE TLQVSKVRID
1401: RWSNLKRAIL LRRFVKALEN VRKFNPREPR FLPPNPEVEA EKVNLRHQET QNKKNGDEWM VDNALQGVVS KLTPARKLKV QLLVQAFESL SATGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)