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AT5G03980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SGNH hydrolase-type esterase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G03980-MONOMEREC:3.1.1.-eggNOG:ENOG410IIK6eggNOG:ENOG410YA52EMBL:AL162873EMBL:CP002688EnsemblPlants:AT5G03980
EnsemblPlants:AT5G03980.1entrez:830277Gene3D:3.40.50.1110GeneID:830277Genevisible:Q9LZB2GO:GO:0005576GO:GO:0016042
GO:GO:0016788Gramene:AT5G03980.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF133HOGENOM:HOG000237651InParanoid:Q9LZB2InterPro:IPR001087
InterPro:IPR013830KEGG:ath:AT5G03980ncoils:CoilOMA:LRKANTDPaxDb:Q9LZB2Pfam:PF00657Pfam:Q9LZB2
PhylomeDB:Q9LZB2PIR:T48425PRIDE:Q9LZB2PRO:PR:Q9LZB2ProteinModelPortal:Q9LZB2Proteomes:UP000006548RefSeq:NP_196018.1
SUPFAM:SSF52266TAIR:AT5G03980UniGene:At.33195UniProt:Q9LZB2
Coordinates (TAIR10) chr5:-:1074205..1075289
Molecular Weight (calculated) 35696.40 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.15
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTTKALSLL VFILFVSLVH SSDQCPINSI YQFGDSISDT GNLIRNGPAS SPTPKPLPQR EHNVFVNFGV SGSTALNSSF FSERNLHVPA TNTPLSMQLA
101: WFKGHLRSTC HGSSSDCLKH SLFMVGEIGG NDYNYGFFQG KPMEEIRSYI PHVVGAITAA AREVIRAGAV NVVVPGNFPV GCFPIYLTSF PVKDTKDYDD
201: NGCLTHLNEF AMDHNNQLQE AIASLRKEFP DVAIVYGDYY NAFQYVLRSE RFDKSVALKS CCGTGGAYNY DGKRPYGAVG VPVCQNPHKF ISWDGVHLTQ
301: KAYRFMSKFL NNQILSQIKC TRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)