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AT5G03790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox 51
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) meristem identity regulator that acts together with LFY to induce CAL expression. It binds to the CAL promoter proximal CAATNATTG element. LMI1 acts primarily downstream of LFY in meristem identity regulation. The interaction between LFY, LMI1 and CAL resembles a feed-forward loop transcriptional network motif. The gene also had additional LFY-independent roles in leaf morphogenesis and bract formation.
Computational
Description (TAIR10)
homeobox 51 (HB51); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 22 (TAIR:AT2G36610.1); Has 11020 Blast hits to 10992 proteins in 578 species: Archae - 2; Bacteria - 0; Metazoa - 8622; Fungi - 156; Plants - 2028; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AB005235EMBL:AL162506EMBL:CP002688EnsemblPlants:AT5G03790EnsemblPlants:AT5G03790.1
entrez:831723Gene3D:1.10.10.60GeneID:831723Genevisible:Q9LZR0GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009965GO:GO:0010434GO:GO:0010582GO:GO:0043565GO:GO:0045893GO:GO:0048510Gramene:AT5G03790.1
hmmpanther:PTHR24326hmmpanther:PTHR24326:SF287HOGENOM:HOG000006025InParanoid:Q9LZR0InterPro:IPR000047InterPro:IPR001356InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT5G03790ncoils:CoilOMA:FMPPPWPPaxDb:Q9LZR0Pfam:PF00046Pfam:Q9LZR0
Pfscan:PS50071PIR:T48406PRINTS:PR00031PRO:PR:Q9LZR0PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q9LZR0
Proteomes:UP000006548RefSeq:NP_195999.2scanprosite:PS00027SMART:SM00389STRING:3702.AT5G03790.1SUPFAM:SSF46689TAIR:AT5G03790
tair10-symbols:ATHB51tair10-symbols:HB51tair10-symbols:LMI1UniGene:At.54712UniProt:Q9LZR0
Coordinates (TAIR10) chr5:+:1004985..1006373
Molecular Weight (calculated) 26841.70 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.74
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)