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AT5G03740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone deacetylase 2C
Curator
Summary (TAIR10)
HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression
Computational
Description (TAIR10)
histone deacetylase 2C (HD2C); FUNCTIONS IN: histone deacetylase activity, transcription repressor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to water deprivation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: nucleolus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2); Has 47549 Blast hits to 20091 proteins in 1212 species: Archae - 111; Bacteria - 17827; Metazoa - 12467; Fungi - 4889; Plants - 1882; Viruses - 518; Other Eukaryotes - 9855 (source: NCBI BLink).
Protein Annotations
BioGrid:17009eggNOG:ENOG410IWRPeggNOG:ENOG41120HPEMBL:AB005235
EMBL:AF255712EMBL:AF372889EMBL:AF510168EMBL:AL162506
EMBL:AY142039EMBL:CP002688EnsemblPlants:AT5G03740EnsemblPlants:AT5G03740.1
entrez:831733GeneID:831733Genevisible:Q9LZR5GO:GO:0005730
GO:GO:0006351GO:GO:0007275GO:GO:0009414GO:GO:0009651
GO:GO:0009737GO:GO:0016568GO:GO:0016787GO:GO:0045892
GO:GO:0046872Gramene:AT5G03740.1hmmpanther:PTHR31802hmmpanther:PTHR31802:SF5
HOGENOM:HOG000029063InParanoid:Q9LZR5IntAct:Q9LZR5InterPro:IPR007087
KEGG:ath:AT5G03740OMA:ALSHTWKPaxDb:Q9LZR5Pfam:Q9LZR5
Pfscan:PS50157PhylomeDB:Q9LZR5PIR:T48401PRIDE:Q9LZR5
PRO:PR:Q9LZR5PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q9LZR5
Proteomes:UP000006548RefSeq:NP_195994.3scanprosite:PS00028STRING:3702.AT5G03740.1
TAIR:AT5G03740tair10-symbols:HD2Ctair10-symbols:HDT3UniGene:At.16830
UniGene:At.4771UniProt:Q9LZR5
Coordinates (TAIR10) chr5:+:981994..983961
Molecular Weight (calculated) 31831.90 Da
IEP (calculated) 4.51
GRAVY (calculated) -1.06
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)