AT5G03700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: stem, sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-domain-2 5 (TAIR:AT4G32300.1); Has 2091 Blast hits to 2063 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2091; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:965874..967322 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53598.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGLCLNSFT RVLLLLFVFL VFSHKWQRVN AVEPVLELVK GFEAKPDSSI DSFQPLLTDS NGNFSFGFLR VNGSRLSLAV THPNLTDPLW VLDPTRSASW 101: SHKTKLFFNG SLVIIDPSSR LEWSTHTNGD RLILRNDSNL QVVKTSTFVE WESFDFPGNT LVESQNFTSA MALVSPNGLY SMRLGSDFIG LYAKVSEESQ 201: QFYWKHSALQ AKAKVKDGAG PILARINPNG YLGMYQTGSI PIDVEAFNSF QRPVNGLLIL RLESDGNLRG YLWDGSHWAL NYEAIRETCD LPNPCGPYSL 301: CTPGSGCSCI DNRTVIGECT HAASSPADFC DKTTEFKVVR RDGVEVPFKE LMDHKTTSSL GECEEMCVDN CKCFGAVYNN GSGFCYLVNY PIRTMLGVAD 401: PSKLGYFKVR EGVGKKKSRV GLTVGMSLLA VIALVLMVAM VYVGFRNWRR EKRVLEEDNG LSPGPYKNLG SDSFNSVEMS RR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)