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AT5G03660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF662)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF662) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G09980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:831768eggNOG:ENOG410JS3QeggNOG:ENOG4111AG1EMBL:AY054234
EMBL:AY072382EMBL:AY088699EMBL:AY114621EMBL:CP002688
EnsemblPlants:AT5G03660EnsemblPlants:AT5G03660.1entrez:831768ExpressionAtlas:Q940P0
GeneID:831768GO:GO:0005886GO:GO:0009506Gramene:AT5G03660.1
hmmpanther:PTHR21470HOGENOM:HOG000239121InterPro:IPR007033ncoils:Coil
OMA:FADPMRKPfam:PF04949PhylomeDB:Q940P0Proteomes:UP000006548
RefSeq:NP_568126.1STRING:3702.AT5G03660.1TAIR:AT5G03660UniGene:At.4766
UniProt:Q940P0
Coordinates (TAIR10) chr5:+:938068..939811
Molecular Weight (calculated) 20187.20 Da
IEP (calculated) 5.33
GRAVY (calculated) -1.13
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPTETSQPA PSDQGRRLKD QLSESMSFSS QMKKEDDELS MKALSAFKAK EEEIEKKKME IRERVQAQLG RVEDESKRLA MIREELEGFA DPMRKEVTMV
101: RKKIDSLDKE LKPLGNTVQK KETEYKDALE AFNEKNKEKV ELITKLQELE GESEKFRFKK LEELSKNIDL TKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)