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AT5G03650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : starch branching enzyme 2.2
Curator
Summary (TAIR10)
Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves.
Computational
Description (TAIR10)
starch branching enzyme 2.2 (SBE2.2); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G03650-MONOMERBioGrid:17045CAZy:CBM48CAZy:GH13EC:2.4.1.18eggNOG:COG0296eggNOG:KOG0470
EMBL:AJ005130EMBL:AK117729EMBL:AL162506EMBL:CP002688EMBL:U22428EnsemblPlants:AT5G03650EnsemblPlants:AT5G03650.1
entrez:831769Gene3D:2.60.40.10Gene3D:2.60.40.1180Gene3D:3.20.20.80GeneID:831769Genevisible:Q9LZS3GO:GO:0003844
GO:GO:0004553GO:GO:0005978GO:GO:0005982GO:GO:0009501GO:GO:0009507GO:GO:0009570GO:GO:0010021
GO:GO:0019252GO:GO:0043169GO:GO:0071329GO:GO:0071332GO:GO:0071333GO:GO:0071482Gramene:AT5G03650.1
gramene_pathway:2.4.1.18gramene_pathway:PWY-622hmmpanther:PTHR10357hmmpanther:PTHR10357:SF141HOGENOM:HOG000175159InParanoid:Q9LZS3InterPro:IPR004193
InterPro:IPR006047InterPro:IPR006048InterPro:IPR006407InterPro:IPR013780InterPro:IPR013781InterPro:IPR013783InterPro:IPR014756
InterPro:IPR015902InterPro:IPR017853KEGG:00500+2.4.1.18KEGG:ath:AT5G03650KO:K00700OMA:VNTYANFPANTHER:PTHR10357
PaxDb:Q9LZS3Pfam:PF00128Pfam:PF02806Pfam:PF02922Pfam:Q9LZS3PhylomeDB:Q9LZS3PIR:S65046
PIR:T48392PIRSF:PIRSF000463PRIDE:Q9LZS3PRO:PR:Q9LZS3ProteinModelPortal:Q9LZS3Proteomes:UP000006548RefSeq:NP_195985.3
SMART:SM00642SMR:Q9LZS3STRING:3702.AT5G03650.1SUPFAM:SSF51011SUPFAM:SSF51445SUPFAM:SSF81296TAIR:AT5G03650
tair10-symbols:SBE2.2UniGene:At.24317UniGene:At.4765UniPathway:UPA00152unipathway:UPA00164UniProt:Q9LZS3
Coordinates (TAIR10) chr5:+:931924..937470
Molecular Weight (calculated) 92596.30 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.47
Length 805 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)