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AT5G03555.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22474184 (2012): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : permease, cytosine/purines, uracil, thiamine, allantoin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
permease, cytosine/purines, uracil, thiamine, allantoin family protein; FUNCTIONS IN: nucleobase transmembrane transporter activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Permease, cytosine/purines, uracil, thiamine, allantoin (InterPro:IPR001248); Has 4949 Blast hits to 4943 proteins in 959 species: Archae - 81; Bacteria - 2901; Metazoa - 0; Fungi - 592; Plants - 52; Viruses - 0; Other Eukaryotes - 1323 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1953eggNOG:KOG0568eggNOG:KOG2466EMBL:AL162751EMBL:AY058195EMBL:AY088516EMBL:CP002688
EnsemblPlants:AT5G03555EnsemblPlants:AT5G03555.1entrez:831791GeneID:831791Genevisible:Q9LZD0GO:GO:0005886GO:GO:0009526
GO:GO:0015205GO:GO:0015851GO:GO:0016021GO:GO:0031969GO:GO:0043100Gramene:AT5G03555.1hmmpanther:PTHR30618
hmmpanther:PTHR30618:SF0HOGENOM:HOG000165632InParanoid:Q9LZD0InterPro:IPR001248KEGG:ath:AT5G03555KO:K03457OMA:WNKWHIT
PaxDb:Q9LZD0Pfam:PF02133Pfam:Q9LZD0PhylomeDB:Q9LZD0PIR:T48383PRIDE:Q9LZD0PRO:PR:Q9LZD0
ProteinModelPortal:Q9LZD0Proteomes:UP000006548RefSeq:NP_568122.2SMR:Q9LZD0STRING:3702.AT5G03555.1TAIR:AT5G03555TMHMM:TMhelix
UniGene:At.4879UniProt:Q9LZD0
Coordinates (TAIR10) chr5:-:898354..900153
Molecular Weight (calculated) 65360.00 Da
IEP (calculated) 9.89
GRAVY (calculated) 0.46
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSNCLSLSL HLNLHPHKHN RHSLSSLRSR TKAKLYQHVS FTDSSHKSSY TSCVSTFDIQ RKSSKHYELG KHSFSPILPG DNLVLSRSGV IRPRLSAMTG
101: SEINDHGYDE SQFDPSLTND DLKPTTPSQR TFSWLDMSSL WIGLVVGVPT YYLAGSLVDL GMAWWQGIAT VVTANLILLV PLVLTAQPGT LYGISFPVLA
201: RSSFGIRGAH IPTLLRALVG CGWYGIETWI GGEAIFLLLP GHIKKSALSH TLPWLGTSPL EFSCFIVFWL AQLCIVWRGM DGIRKLEKYS APILISLTSC
301: LLAWSYLKAG GFGHMLSLSS KLTSAQFWTL FFPSLTANIS FWATLALNIP DFSRFAKSQT DQIIGQVGLP VFMGLFTFVG VAVTSSTSII FGRVISNPIE
401: LLGQIGGLAT TLLAIVGISL ATLTTNIAAN VVAPANALVN LNPKFFTFGR GAFLTAVLGI VFQPWRLLKS SESFVYTWLI GYSALLGPIG GIILVDYYLI
501: KKMKLNIGDL YSLSPSGEYY FSKGYNVAAV VALVAGIIPV VPGFLHKISA LSKISNGFVV VYDNALFFSF IIAGFVYWII MSRLGRKQSS LSSSSHPLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)