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AT5G03415.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcription factor DP
Curator
Summary (TAIR10)
Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.
Computational
Description (TAIR10)
DPB; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G02470.3); Has 509 Blast hits to 501 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 7; Plants - 91; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
BioGrid:17123eggNOG:ENOG410Y9QPeggNOG:KOG2829EMBL:AB493733
EMBL:AJ294532EMBL:AK228148EMBL:AL162751EMBL:AY086018
EMBL:CP002688EnsemblPlants:AT5G03415EnsemblPlants:AT5G03415.1entrez:831847
Gene3D:1.10.10.10GeneID:831847Genevisible:Q9FNY2GO:GO:0000082
GO:GO:0000981GO:GO:0003677GO:GO:0005634GO:GO:0005667
GO:GO:0005737GO:GO:0006351GO:GO:0006357GO:GO:0042023
GO:GO:0046982hmmpanther:PTHR12548HOGENOM:HOG000029891InParanoid:Q9FNY2
IntAct:Q9FNY2InterPro:IPR003316InterPro:IPR011991InterPro:IPR014889
InterPro:IPR015648KEGG:ath:AT5G03415ncoils:CoilOMA:LIQRNEH
PANTHER:PTHR12548PaxDb:Q9FNY2Pfam:PF02319Pfam:PF08781
Pfam:Q9FNY2PhylomeDB:Q9FNY2PIR:T48364PIRSF:PIRSF009404
PRIDE:Q9FNY2PRO:PR:Q9FNY2ProteinModelPortal:Q9FNY2Proteomes:UP000006548
Reactome:R-ATH-113510Reactome:R-ATH-1538133Reactome:R-ATH-69205RefSeq:NP_001190214.1
RefSeq:NP_850757.1SMART:SM01138SMART:SM01372SMR:Q9FNY2
STRING:3702.AT5G03415.1SUPFAM:SSF144074SUPFAM:SSF46785TAIR:AT5G03415
tair10-symbols:ATDPBtair10-symbols:DPBUniGene:At.4864UniProt:Q9FNY2
Coordinates (TAIR10) chr5:+:842842..845200
Molecular Weight (calculated) 42757.60 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.91
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)