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AT5G03345.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17143eggNOG:ENOG410J1E7eggNOG:ENOG4111UG5EMBL:AL162751EMBL:AY086191EMBL:BT024556EMBL:CP002688
EnsemblPlants:AT5G03345EnsemblPlants:AT5G03345.1entrez:831867GeneID:831867Genevisible:Q2HIM5GO:GO:0000139GO:GO:0005783
GO:GO:0005789GO:GO:0016021GO:GO:0031901hmmpanther:PTHR21181HOGENOM:HOG000244123InParanoid:Q2HIM5InterPro:IPR018937
KEGG:ath:AT5G03345OMA:IHPDSDEPaxDb:Q2HIM5Pfam:PF10270Pfam:Q2HIM5PhylomeDB:Q2HIM5PRIDE:Q2HIM5
PRO:PR:Q2HIM5Proteomes:UP000006548RefSeq:NP_001078523.1RefSeq:NP_568115.1TAIR:AT5G03345TMHMM:TMhelixUniGene:At.33290
UniProt:Q2HIM5
Coordinates (TAIR10) chr5:+:814196..815478
Molecular Weight (calculated) 11828.70 Da
IEP (calculated) 6.23
GRAVY (calculated) 0.41
Length 104 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLGFLVGVF GVLILSHAAY STIQYRGLLK IMEEEFSRPP INVILELIIG LALCMWAALT FPGKFLSIHP DSDENRAVFL PDNSDFMIFN HRGRLFPPQI
101: DMKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)