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AT5G03240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.658
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : polyubiquitin 3
Curator
Summary (TAIR10)
encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.
Computational
Description (TAIR10)
polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink).
Protein Annotations
BioGrid:17175eggNOG:COG5272eggNOG:KOG0001EMBL:AB005240EMBL:AK317101EMBL:AL163002EMBL:BT002420
EMBL:BT025868EMBL:CP002688EMBL:L05363EnsemblPlants:AT5G03240EnsemblPlants:AT5G03240.1EnsemblPlants:AT5G03240.2EnsemblPlants:AT5G03240.3
entrez:831899GeneID:831899Genevisible:Q1EC66GO:GO:0005634GO:GO:0005773GO:GO:0006511GO:GO:0010224
Gramene:AT5G03240.1Gramene:AT5G03240.2Gramene:AT5G03240.3hmmpanther:PTHR10666InParanoid:Q1EC66InterPro:IPR000626InterPro:IPR019954
InterPro:IPR019956InterPro:IPR029071KEGG:ath:AT5G03240KO:K08770PaxDb:Q1EC66Pfam:PF00240Pfam:Q1EC66
Pfscan:PS50053PRIDE:Q1EC66PRINTS:PR00348PRO:PR:Q1EC66PROSITE:PS00299PROSITE:PS50053ProteinModelPortal:Q1EC66
Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-174184Reactome:R-ATH-179409Reactome:R-ATH-349425
Reactome:R-ATH-450302Reactome:R-ATH-450321Reactome:R-ATH-5358346Reactome:R-ATH-5632684Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169
Reactome:R-ATH-5696394Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-917729Reactome:R-ATH-983168RefSeq:NP_001031824.1RefSeq:NP_568112.2RefSeq:NP_851029.1
scanprosite:PS00299SMART:SM00213SMR:Q1EC66STRING:3702.AT5G03240.1SUPFAM:SSF54236TAIR:AT5G03240tair10-symbols:UBQ3
UniGene:At.46169UniGene:At.49314UniGene:At.68083UniGene:At.75559UniGene:At.75636UniProt:Q1EC66
Coordinates (TAIR10) chr5:-:771976..772896
Molecular Weight (calculated) 34281.40 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.44
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)