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AT5G03040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : IQ-domain 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1); Has 1155 Blast hits to 1120 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 71; Fungi - 33; Plants - 987; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFNWeggNOG:ENOG4111IYPEMBL:AY057527EMBL:AY143972EMBL:CP002688EnsemblPlants:AT5G03040EnsemblPlants:AT5G03040.1
EnsemblPlants:AT5G03040.2EnsemblPlants:AT5G03040.3entrez:831696GeneID:831696GO:GO:0005886Gramene:AT5G03040.1Gramene:AT5G03040.2
Gramene:AT5G03040.3hmmpanther:PTHR32295hmmpanther:PTHR32295:SF28HOGENOM:HOG000238563IntAct:Q93ZH7InterPro:IPR000048KEGG:ath:AT5G03040
OMA:YSHQQNWPfam:PF00612Pfscan:PS50096PhylomeDB:Q93ZH7PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_001154693.1
RefSeq:NP_001190211.1RefSeq:NP_568110.2SMART:SM00015SMR:Q93ZH7STRING:3702.AT5G03040.1TAIR:AT5G03040tair10-symbols:iqd2
UniGene:At.25015UniProt:Q93ZH7
Coordinates (TAIR10) chr5:-:710380..712406
Molecular Weight (calculated) 50465.50 Da
IEP (calculated) 11.32
GRAVY (calculated) -0.84
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)