AT5G02990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G46050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:700169..702630 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62774.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||
| Length | 548 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSPKSSSSE SSSPPTSFSS LPFDVALNCW ARVSRIHYPT LFLVSKNLRS LIASPELEAT RLRIGITEDF VCLDLNKKNP NPSWFILSST PKQQKLLPIP 101: SFPYQHPKYS TILLVDSLIY IIGGIVNRQR SNRVLILNSL SHQWSSSSKN IGDWGEVYDP KTHTWEPILP TTLDLTAQKS VVQDRLVMGG KVYAMDGLKI 201: ELKTNICLVE KCLRLVSYSN HSLYWNDPTE DCVWRFHYPT LSLVSKGFRS LIASPELEAT RSFIGETENH LCVCLNLNKN NNYNPRWFTL SPIAKQKLKS 301: IPWHRHQYPK SSTVVANGSD IYIVGGFVCG TSSKRVFVFD SRSHQWRRLH DMRLPRVSAV VNIVDKKIYV IGGYKPRNIK DCGEVYDPNT QTWEPLLPTT 401: VNLTIQNCVV SGGLVMGGKR YTTNGTKMNT CFVELENLLL GLSETYRDLV WRELKEDVWR VVRGLEQLSH NQNFTYVGNS GGGRRVAIWW KSMVVFRPRG 501: RSHSTKKCKT EIWCAEISVE RRGLGELWGR FSFSFRDSFI YIFLWEFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)