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AT5G02990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G46050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL163002EMBL:CP002688EnsemblPlants:AT5G02990EnsemblPlants:AT5G02990.1entrez:831714
Gene3D:2.130.10.80GeneID:831714Genevisible:Q9LYY6Gramene:AT5G02990.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23InParanoid:Q9LYY6
InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT5G02990PaxDb:Q9LYY6Pfam:PF01344Pfam:Q9LYY6PIR:T48320
PRO:PR:Q9LYY6ProteinModelPortal:Q9LYY6Proteomes:UP000006548RefSeq:NP_195919.2SMART:SM00612SMR:Q9LYY6SUPFAM:0052715
TAIR:AT5G02990UniGene:At.54697UniProt:Q9LYY6
Coordinates (TAIR10) chr5:+:700169..702630
Molecular Weight (calculated) 62774.50 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.27
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPKSSSSE SSSPPTSFSS LPFDVALNCW ARVSRIHYPT LFLVSKNLRS LIASPELEAT RLRIGITEDF VCLDLNKKNP NPSWFILSST PKQQKLLPIP
101: SFPYQHPKYS TILLVDSLIY IIGGIVNRQR SNRVLILNSL SHQWSSSSKN IGDWGEVYDP KTHTWEPILP TTLDLTAQKS VVQDRLVMGG KVYAMDGLKI
201: ELKTNICLVE KCLRLVSYSN HSLYWNDPTE DCVWRFHYPT LSLVSKGFRS LIASPELEAT RSFIGETENH LCVCLNLNKN NNYNPRWFTL SPIAKQKLKS
301: IPWHRHQYPK SSTVVANGSD IYIVGGFVCG TSSKRVFVFD SRSHQWRRLH DMRLPRVSAV VNIVDKKIYV IGGYKPRNIK DCGEVYDPNT QTWEPLLPTT
401: VNLTIQNCVV SGGLVMGGKR YTTNGTKMNT CFVELENLLL GLSETYRDLV WRELKEDVWR VVRGLEQLSH NQNFTYVGNS GGGRRVAIWW KSMVVFRPRG
501: RSHSTKKCKT EIWCAEISVE RRGLGELWGR FSFSFRDSFI YIFLWEFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)