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AT5G02940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1012)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1012); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G43745.1); Has 374 Blast hits to 371 proteins in 64 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1226eggNOG:ENOG410IGYUEMBL:AL162973EMBL:AY048284
EMBL:AY064004EMBL:CP002688EnsemblPlants:AT5G02940EnsemblPlants:AT5G02940.1
entrez:831426Gene3D:3.40.50.720GeneID:831426Genevisible:Q8VZM7
GO:GO:0006813GO:GO:0008324GO:GO:0009507GO:GO:0009941
GO:GO:0016021Gramene:AT5G02940.1hmmpanther:PTHR31563hmmpanther:PTHR31563:SF2
HOGENOM:HOG000083588InParanoid:Q8VZM7InterPro:IPR006037InterPro:IPR010420
InterPro:IPR016040iPTMnet:Q8VZM7KEGG:ath:AT5G02940ncoils:Coil
OMA:ETICNKLPaxDb:Q8VZM7Pfam:PF06241Pfam:Q8VZM7
PhylomeDB:Q8VZM7PIR:T48315PRIDE:Q8VZM7PRO:PR:Q8VZM7
ProteinModelPortal:Q8VZM7Proteomes:UP000006548RefSeq:NP_195914.2SMR:Q8VZM7
STRING:3702.AT5G02940.1SUPFAM:SSF116726SUPFAM:SSF81324TAIR:AT5G02940
TMHMM:TMhelixUniGene:At.4984UniProt:Q8VZM7
Coordinates (TAIR10) chr5:-:684671..689674
Molecular Weight (calculated) 92142.90 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.17
Length 813 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAVQLFTWK PLILPSQALT RDRLASFHRS LSLHSLPLGG IKSSSFRGTF KVKSQRTGDT EPPNKNFKDL NSKFYKSLPY KLVIGCIPLY AVLRIAQKIF
101: QELPNLIQNS VKAGLPFACA SNAIDKHPLL KAIPSSHDIK WGLARSSYLF NTQLEKNLGT VFVVLLITCF SFVIIGGLFF FKFRKDTSLE DCLWEAWACL
201: VNADTHLEQK TRFERLIGFV LAIWGIVFYS RLLSTMTEQF RYHMKKVREG AHMQVLESDH IIICGINSHL PFILKQLNSY QQHAVRLGTT TARKQTLLLM
301: SDTPRKEMDK LAEAYAKDFD QLDILTKSCS LNMTKSFERA AACMARAIII LPTKGDRYEV DTDAFLSVLA LEPIQKMESI PTIVEVSSSN MYDLLKSISG
401: LKVEPVENST SKLFVQCSRQ KDLIKIYRHL LNYSKNVFNL CSFPNLTGMK YRQLRLGFQE VVVCGILRDG KVNFHPNDDE ELMETDKLLF IAPLKKDFLY
501: TDMKTENMTV DETDDTRKQV YEEKKSRLEK IITRPSKSLS KGSDSFKGPK ESILLLGWRG DVVNMIKEFD SYLGPGSSLE ILSDVPLEDR RGVDQSIATG
601: KIKNIQVSHS VGNHMDYDTL KESIMHMQNK YEKGEEDIRL TIVVISDRDL LLGDPSRADK QSAYTLLLAE TICNKLGVKV HNLASEIVDT KLGKQITRLK
701: PSLTFIAAEE VMSLVTAQVA ENSELNEVWK DILDAEGDEI YVKDIELYMK EGENPSFTEL SERAWLRREV AIGYIKGGKK IINPVPKTEP VSLEMEDSLI
801: VISELEGDQV ITL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)