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AT5G02870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L4/L1 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT3G09630.1); Has 1138 Blast hits to 1137 proteins in 402 species: Archae - 316; Bacteria - 12; Metazoa - 270; Fungi - 177; Plants - 117; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).
Protein Annotations
BioGrid:17032eggNOG:COG0088eggNOG:KOG1475EMBL:AL162973EMBL:AY054479EMBL:AY059886EMBL:AY062452
EMBL:AY093384EMBL:AY114639EMBL:AY136320EMBL:BT002088EMBL:CP002688EMBL:Z17589EMBL:Z18118
EMBL:Z18460EnsemblPlants:AT5G02870EnsemblPlants:AT5G02870.1entrez:831756ExpressionAtlas:P49691Gene3D:3.40.1370.10GeneID:831756
Genevisible:P49691GO:GO:0003735GO:GO:0005730GO:GO:0005773GO:GO:0005774GO:GO:0005829GO:GO:0005886
GO:GO:0006412GO:GO:0009506GO:GO:0009507GO:GO:0009735GO:GO:0016020GO:GO:0022625GO:GO:0022626
hmmpanther:PTHR19431HOGENOM:HOG000107331InParanoid:P49691IntAct:P49691InterPro:IPR002136InterPro:IPR013000InterPro:IPR023574
InterPro:IPR025755iPTMnet:P49691ncoils:CoilOMA:FQACARPPaxDb:P49691Pfam:P49691Pfam:PF00573
Pfam:PF14374PhylomeDB:P49691PIR:T48308PRIDE:P49691PRO:PR:P49691PROSITE:PS00939ProteinModelPortal:P49691
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_195907.1scanprosite:PS00939SMR:P49691STRING:3702.AT5G02870.1SUPFAM:SSF52166TAIR:AT5G02870UniGene:At.21294
UniProt:P49691
Coordinates (TAIR10) chr5:+:657830..659526
Molecular Weight (calculated) 44724.50 Da
IEP (calculated) 11.01
GRAVY (calculated) -0.38
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MVASAAARPL VTVQGLDGDM STDQSTTVTL PDVMTAPVRP DIVNFVHAQI SNNSRQPYAV SKKAGHQTSA ESWGTGRAVS RIPRVPGGGT HRAGQAAFGN
101: MCRGGRMFAP TKIWRRWHRR VNVNMKRHAI VSAIAATAVP ALVMARGHKI ENVPEMPLVV SDSAEAVEKT SAAIKVLKQI GAYDDAEKAK NSIGIRPGKG
201: KMRNRRYISR KGPLVVFGTE GAKIVKAFRN LPGVELCHVE RLNLLKLAPG GHLGRFVIWT KSAFEKLESI YGSFEKPSEK KKGYVLPRAK MVNADLARII
301: NSDEVQSVVN PIKDGSKRAV LKKNPLKNLN VMFKLNPYAK TAKRMSLLAE ASRVKAKKEK LEKKRKVVTK EEAQAIKAAG KAWYQTMISD SDYTEFDNFT
401: KWLGASQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)