AT5G02850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med4 (InterPro:IPR019258); Has 258 Blast hits to 243 proteins in 75 species: Archae - 0; Bacteria - 23; Metazoa - 102; Fungi - 36; Plants - 37; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:652159..653439 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46158.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLQHQIVQSP ARLGLTGPGS PSVQNPTPTR HGHPTSSSSS QSQHQQIQQQ PNLLPSSTVA AASSASASAA VSSSALLSLL PPLPRAQALL QQMAVLTSKL 101: FDVSPNRAIW LSAFRGSLPS FLSSHSLPPP PPLENPSPSS TKEILSQFNS LQTQLFEAVT ELQEILDLQD AKQKVAREIK SKDSSLLAFA NKLKDAERVL 201: DMLVDDYSDY RKPKRSKIEE DDEDNDNESS SSSTTVSSQL KLKDILAYAH KISYTTFAPP EFGAGQAPLR GALPPAPQDE QMRASQLYTF ADLDIGLPKT 301: VENMEKKVEA LIEPPPPPEA MDISAIHNLL PPNIAVPSGW KPGMPVELPR DLPLPPPGWK PGDPVVLPPL ESIAAPRAED HQHMRPSQGL HRPPDVIQVR 401: AVQLDILEDD DSSDYSSDDA SSDDED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)