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AT5G02820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Spo11/DNA topoisomerase VI, subunit A protein
Curator
Summary (TAIR10)
Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication
Computational
Description (TAIR10)
ROOT HAIRLESS 2 (RHL2); CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), DNA topoisomerase VI, subunit A (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT3G13170.1); Has 936 Blast hits to 932 proteins in 314 species: Archae - 223; Bacteria - 16; Metazoa - 170; Fungi - 119; Plants - 152; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1823-MONOMERBioGrid:16591EC:5.99.1.3eggNOG:COG1697
eggNOG:KOG2795EMBL:AF323679EMBL:AJ297842EMBL:AL162973
EMBL:BT028966EMBL:CP002688EnsemblPlants:AT5G02820EnsemblPlants:AT5G02820.1
entrez:831314Gene3D:1.10.10.10GeneID:831314Genevisible:Q9LZ03
GO:GO:0000287GO:GO:0000737GO:GO:0003677GO:GO:0003918
GO:GO:0005524GO:GO:0005634GO:GO:0005694GO:GO:0006265
GO:GO:0009330GO:GO:0009957GO:GO:0042802Gramene:AT5G02820.1
HAMAP:MF_00132hmmpanther:PTHR10848hmmpanther:PTHR10848:SF0HOGENOM:HOG000225930
InParanoid:Q9LZ03IntAct:Q9LZ03InterPro:IPR002815InterPro:IPR004085
InterPro:IPR011991InterPro:IPR013049KEGG:ath:AT5G02820KO:K10878
OMA:WEEQIELPANTHER:PTHR10848PaxDb:Q9LZ03Pfam:PF04406
Pfam:Q9LZ03PhylomeDB:Q9LZ03PIR:T48303PRIDE:Q9LZ03
PRINTS:PR01550PRINTS:PR01552PRO:PR:Q9LZ03ProteinModelPortal:Q9LZ03
Proteomes:UP000006548RefSeq:NP_195902.1SMR:Q9LZ03STRING:3702.AT5G02820.1
SUPFAM:0036260SUPFAM:SSF56726TAIR:AT5G02820tair10-symbols:BIN5
tair10-symbols:RHL2UniGene:At.33359UniGene:At.66674UniProt:Q9LZ03
Coordinates (TAIR10) chr5:+:642658..644123
Molecular Weight (calculated) 47448.50 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.15
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)