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AT5G02640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0HIeggNOG:ENOG410YQNWEMBL:AL162971EMBL:CP002688
EMBL:DQ446913EnsemblPlants:AT5G02640EnsemblPlants:AT5G02640.1entrez:831166
GeneID:831166Gramene:AT5G02640.1hmmpanther:PTHR35304KEGG:ath:AT5G02640
OMA:AKDISCAPhylomeDB:Q9LZ38PIR:T48285Proteomes:UP000006548
RefSeq:NP_195884.1TAIR:AT5G02640UniGene:At.33389UniProt:Q9LZ38
Coordinates (TAIR10) chr5:-:594334..594819
Molecular Weight (calculated) 18125.60 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.65
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSVCISSCI NDAHDPRVPV RPVRASYVNL YKWPESDAEF VRSVRRGGGL PAARVVDSIS CRQMYLRSYT FSREDDESKS EKVSSGTQTS CLGRVKGTAS
101: SRRKSKEENG IIIVESTKPR RRGEKRRVSR KNKQEQACSV ILRIFRRLLS CAATVDVVDP N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)