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AT5G02630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.863
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT5G18520.1); Has 463 Blast hits to 460 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 268; Fungi - 2; Plants - 160; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAQeggNOG:KOG2569EMBL:AK117185EMBL:AL162971EMBL:BT005363EMBL:CP002688EnsemblPlants:AT5G02630
EnsemblPlants:AT5G02630.1entrez:831851GeneID:831851GO:GO:0016021Gramene:AT5G02630.1hmmpanther:PTHR21229hmmpanther:PTHR21229:SF2
HOGENOM:HOG000238447InterPro:IPR009637KEGG:ath:AT5G02630OMA:LADITCCPANTHER:PTHR21229Pfam:PF06814PhylomeDB:Q9LZ39
PIR:T48284Proteomes:UP000006548RefSeq:NP_195883.1STRING:3702.AT5G02630.1TAIR:AT5G02630TMHMM:TMhelixUniGene:At.33392
UniProt:Q9LZ39
Coordinates (TAIR10) chr5:+:591798..593084
Molecular Weight (calculated) 48885.60 Da
IEP (calculated) 7.42
GRAVY (calculated) 0.62
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MTILPFLAAV FVLQLLSTLT VAEIKSFTIS NDSRPVILLE KFGIIEIGHV TVSVSSVSVL SPILDSSKLG FFVLSEESLP HVLLELQQNF SFCVLDSHYI
101: LHFFTFVDLS PPPRSQFSKS YPITSPNDYS LFFANCVPET RVSMKVHTEI YHDLYPNGSR DYLLAGSAQL PGLYLVFFLC YLSFLCFWLC FCWNHKQIVK
201: RIHLLMTALL LVKSLTLICA AVYKHYVKVT GTAHGWNIVF YIFQFISVVL LFMVIVLIGN GWSFLKPKLH VKEKKLLVIV VPLQVLANIA SIVIGETGPY
301: TQDWVSWNQI FFLADITCCC AIVFAMVWSM CCLRETSKTD GKAVKNLAKL PVLRKFYVLV IGYLFFTRIV VVVMKMKADF TYQWVSNAAE EIATLSFYCL
401: MFYMFRPIEK NEYCDVDDEE EIVELSLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)