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AT5G02610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L29 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 1285 Blast hits to 1285 proteins in 517 species: Archae - 138; Bacteria - 370; Metazoa - 303; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0255eggNOG:KOG3436EMBL:AK226248EnsemblPlants:AT5G02610EnsemblPlants:AT5G02610.1entrez:831853ExpressionAtlas:Q0WWT8
Gene3D:1.10.287.310GeneID:831853GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT5G02610.1HAMAP:MF_00374
hmmpanther:PTHR13872InterPro:IPR001854InterPro:IPR018254ncoils:CoilPaxDb:Q0WWT8Pfam:PF00831Pfam:Q9LZ41
PhylomeDB:Q0WWT8PRIDE:Q0WWT8PROSITE:PS00579ProteinModelPortal:Q0WWT8RefSeq:NP_195881.1scanprosite:PS00579SMR:Q0WWT8
STRING:3702.AT3G09500.1SUPFAM:SSF46561TAIR:AT5G02610TIGRfam:TIGR00012TIGRFAMs:TIGR00012UniGene:At.43044UniProt:Q0WWT8
UniProt:Q9LZ41
Coordinates (TAIR10) chr5:+:587611..588547
Molecular Weight (calculated) 14332.10 Da
IEP (calculated) 11.60
GRAVY (calculated) -0.73
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)