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AT5G02580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein 1589 of unknown function
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1); Has 206 Blast hits to 206 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1ZReggNOG:ENOG410YX6SEMBL:AK227439EMBL:BT005835
EMBL:CP002688EnsemblPlants:AT5G02580EnsemblPlants:AT5G02580.1entrez:831095
ExpressionAtlas:Q84TG0GeneID:831095Gramene:AT5G02580.1hmmpanther:PTHR31871
hmmpanther:PTHR31871:SF3HOGENOM:HOG000238449InterPro:IPR006476KEGG:ath:AT5G02580
OMA:RNTDDNDPfam:PF09713PhylomeDB:Q84TG0Proteomes:UP000006548
RefSeq:NP_568103.3STRING:3702.AT5G02580.1TAIR:AT5G02580TIGRfam:TIGR01589
TIGRFAMs:TIGR01589UniGene:At.33400UniProt:Q84TG0
Coordinates (TAIR10) chr5:+:579965..580454
Molecular Weight (calculated) 10775.90 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.61
Length 91 amino acids
Sequence (TAIR10)
(BLAST)
1: MGDHNSSQAS YIHLVHHLIE ECIVFNMGKE ECMDALFKHA NIKPIITSTV WKELAKENKE FFEAYERRRE EIPTEKETAR RIRDLLSRTT I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)