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AT5G02500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : heat shock cognate protein 70-1
Curator
Summary (TAIR10)
encodes a member of heat shock protein 70 family.
Computational
Description (TAIR10)
heat shock cognate protein 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to cold, response to virus, response to heat; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G02490.1); Has 34264 Blast hits to 33945 proteins in 4852 species: Archae - 163; Bacteria - 16558; Metazoa - 3831; Fungi - 1761; Plants - 1266; Viruses - 306; Other Eukaryotes - 10379 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-225-MONOMERBioCyc:ARA:GQT-44-MONOMERBioGrid:16298eggNOG:COG0443eggNOG:KOG0101EMBL:AL162971EMBL:AY035123
EMBL:AY057481EMBL:AY120747EMBL:BT002754EMBL:CP002688EMBL:M23105EMBL:M23108EMBL:X74604
EMBL:X77199EnsemblPlants:AT5G02500EnsemblPlants:AT5G02500.1entrez:831020ExpressionAtlas:P22953Gene3D:1.20.1270.10Gene3D:2.60.34.10
GeneID:831020Genevisible:P22953GO:GO:0002020GO:GO:0005524GO:GO:0005618GO:GO:0005634GO:GO:0005730
GO:GO:0005737GO:GO:0005774GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0006351GO:GO:0006355
GO:GO:0009408GO:GO:0009409GO:GO:0009506GO:GO:0009507GO:GO:0009615GO:GO:0010187GO:GO:0016020
GO:GO:0022626GO:GO:0042742GO:GO:0046686GO:GO:0048046GO:GO:0050832GO:GO:0090332GO:GO:0098542
hmmpanther:PTHR19375hmmpanther:PTHR19375:SF232HOGENOM:HOG000228135InParanoid:P22953IntAct:P22953InterPro:IPR013126InterPro:IPR018181
InterPro:IPR029047InterPro:IPR029048iPTMnet:P22953MINT:MINT-8061914ncoils:CoilOMA:CSETIAWPaxDb:P22953
Pfam:P22953Pfam:PF00012PhylomeDB:P22953PIR:S46302PIR:T48271PRIDE:P22953PRINTS:PR00301
PRO:PR:P22953PROSITE:PS00297PROSITE:PS00329PROSITE:PS01036ProteinModelPortal:P22953Proteomes:UP000006548Reactome:R-ATH-3371453
Reactome:R-ATH-3371568Reactome:R-ATH-3371571Reactome:R-ATH-72163RefSeq:NP_195870.1scanprosite:PS00297scanprosite:PS00329scanprosite:PS01036
SMR:P22953STRING:3702.AT5G02500.1SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067SWISS-2DPAGE:P22953TAIR:AT5G02500
tair10-symbols:AT-HSC70-1tair10-symbols:HSC70tair10-symbols:HSC70-1tair10-symbols:HSP70-1TCDB:1.A.33.1.1UniGene:At.23663UniProt:P22953
World-2DPAGE:0003:P22953
Coordinates (TAIR10) chr5:-:554055..556334
Molecular Weight (calculated) 71361.70 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.44
Length 651 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)