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AT5G02450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17934214 (2008): cytosol
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L36e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT3G53740.4); Has 754 Blast hits to 753 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 355; Fungi - 139; Plants - 140; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
BioGrid:17183eggNOG:COG5051eggNOG:KOG3452EMBL:AF324687
EMBL:AF326882EMBL:AF339702EMBL:AL162971EMBL:AY057706
EMBL:AY087041EMBL:AY133624EMBL:CP002688EnsemblPlants:AT5G02450
EnsemblPlants:AT5G02450.1entrez:831907GeneID:831907Genevisible:Q9LZ57
GO:GO:0003735GO:GO:0005774GO:GO:0006412GO:GO:0009506
GO:GO:0022625Gramene:AT5G02450.1hmmpanther:PTHR10114HOGENOM:HOG000155312
InParanoid:Q9LZ57IntAct:Q9LZ57InterPro:IPR000509KEGG:ath:AT5G02450
KO:K02920OMA:GTHRRAKPANTHER:PTHR10114PaxDb:Q9LZ57
Pfam:PF01158Pfam:Q9LZ57PhylomeDB:Q9LZ57PIR:T48266
PRIDE:Q9LZ57PRO:PR:Q9LZ57PROSITE:PS01190ProteinModelPortal:Q9LZ57
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_195865.1
scanprosite:PS01190SMR:Q9LZ57STRING:3702.AT5G02450.1TAIR:AT5G02450
UniGene:At.23015UniProt:Q9LZ57
Coordinates (TAIR10) chr5:+:533501..534394
Molecular Weight (calculated) 12190.30 Da
IEP (calculated) 12.13
GRAVY (calculated) -0.96
Length 108 amino acids
Sequence (TAIR10)
(BLAST)
001: MVATGLFVGL NKGHVVTKRE QPPRPNNRKG KTSKRTIFIR NLIKEVAGQA PYEKRITELL KVGKDKRALK VAKRKLGTHK RAKRKREEMS SVLRKMRSGG
101: AGASEKKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)