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AT5G02430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G37670.1); Has 36529 Blast hits to 22743 proteins in 728 species: Archae - 54; Bacteria - 5358; Metazoa - 14165; Fungi - 7974; Plants - 4415; Viruses - 3; Other Eukaryotes - 4560 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AL162971EMBL:CP002688EnsemblPlants:AT5G02430EnsemblPlants:AT5G02430.1entrez:831780
Gene3D:2.130.10.10GeneID:831780Gramene:AT5G02430.1hmmpanther:PTHR14221hmmpanther:PTHR14221:SF7HOGENOM:HOG000239143InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT5G02430OMA:YVWKHEEPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9LZ59PIR:T48264PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_195863.1scanprosite:PS00678SMART:SM00320SMR:Q9LZ59STRING:3702.AT5G02430.1
SUPFAM:SSF50978TAIR:AT5G02430UniGene:At.54687UniProt:Q9LZ59
Coordinates (TAIR10) chr5:+:526592..529839
Molecular Weight (calculated) 99899.80 Da
IEP (calculated) 7.59
GRAVY (calculated) -0.67
Length 905 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRGGENGK LDRKKTMTMN WAGLGEFEDD DDHFFDSSNR ISTVVPSDLA SSSDEEEGEF DDCRISFSSN VSSSSRAAPA PDMSPDYDIW MSAPGSITER
101: RRRLLNGMGL ESKKTRLGAI SIQRVSEPVA ATGECSGSRV AEVKVEESDH NSPVNQRVRR SPSMSVLLVR SRSDSDIEAS SAEKQRKEEM LGKTSKSRLT
201: RTASAIGAPC ARICPYFTQT QASPPDAPNG HHQSQGQRSG PLLSSVVSNT RFSAFFLIKN LDTGKEFIVK EYGENGMWNR LSDLQTGKQL TMEEFEKSVG
301: YSSVVKDLMR RENANSTMDF RKFNSYVSKS LRVSKKRGAA LLKNIKDVAH SMSSSKVSEK EKDSTGSGTS SPKVAEKNNE QANQWVKVRH SGKSHKDLSA
401: LHMCQEIQAH QGGIWTMKFS PDSHLLASAG EDCAIHVWEV QECEIMSMNE GSLTPIHPSM SGSTDKSSEG DAAEVSQDKK KKGKTSMSKK GNQIPDYVHA
501: PETVFSLSDK PICSFTGHLD DVLDLSWSRS QLLLSSSMDK TVRLWDIETQ SCLKLFAHND YVTCVQFNPL DEDYFISGSL DAKIRIWNIS NRQVVEWNDL
601: KEMVTAVCYT PDGQAAFVGS INGHCRLYSA EDCKLEQTNQ IDLQNKKKAQ AKKITAFQFS PINPSEVLVT SADSRIRVLD GTELVQKFRG FKNMNSQMTA
701: SYTVDAKHIV CASEDSQVYV WKHEEPRLGI TGRKTVTMCT SYETFPCKDV SVAVPWNGVV KGEPPSTQHQ SKRNPKKPST TTTTPENTTT GKKSGLPPLP
801: KKNNDGTADG ATEQHQEDDP ATHISHNESE NNTGESIKHG DSPSISISSR ISSWSWFDSS GSHGTHSVQP TAWGMVIVTA TIKGQIRTYQ NFGLPRRVGR
901: QGSLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)