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AT5G02310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.955
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proteolysis 6
Curator
Summary (TAIR10)
Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.
Computational
Description (TAIR10)
proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XRM3eggNOG:KOG1139eggNOG:KOG1140EMBL:AL162874EMBL:CP002688EMBL:X95962
EnsemblPlants:AT5G02310EnsemblPlants:AT5G02310.1entrez:830916Gene3D:3.30.40.10GeneID:830916Genevisible:F4KCC2GO:GO:0000151
GO:GO:0004842GO:GO:0005737GO:GO:0006511GO:GO:0008270GO:GO:0009737GO:GO:0010029GO:GO:0016874
GO:GO:0050994GO:GO:0061630GO:GO:0071596Gramene:AT5G02310.1hmmpanther:PTHR21497hmmpanther:PTHR21497:SF24HOGENOM:HOG000029861
InParanoid:F4KCC2InterPro:IPR003126InterPro:IPR011991InterPro:IPR013083KEGG:ath:AT5G02310OMA:HLFFVLGPaxDb:F4KCC2
Pfam:F4KCC2Pfam:PF02207Pfscan:PS51157PIR:T48251PIR:T48252PRIDE:F4KCC2PRO:PR:F4KCC2
PROSITE:PS51157ProteinModelPortal:F4KCC2Proteomes:UP000006548RefSeq:NP_195851.2SMART:SM00396STRING:3702.AT5G02310.1SUPFAM:SSF46785
TAIR:AT5G02310tair10-symbols:PRT6UniGene:At.4907UniPathway:UPA00143UniProt:F4KCC2
Coordinates (TAIR10) chr5:+:474279..482552
Molecular Weight (calculated) 223976.00 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.20
Length 2006 amino acids
Sequence (TAIR10)
(BLAST)
0001: METNSSLFGL VSPSSHDLVI ERLASVGVPK KYRSKRGLVE FVRANPAKIS ELVSALLPTD DDVKLGLKEA RERPRKSAVS PTMKKRFRES MNMLQWLMFQ
0101: DEPDVSLRNL AKLNLDQRGV CGSVWGQNDI AYRCRTCEND PTCAICVPCF QNGDHNSHDY SIIYTGGGCC DCGDETAWKP DGFCSNHKGS EQIRPLSENL
0201: ANSVGPILDA LFTCWNNKLL SAESSGQKGA RSNDTLVILQ KMSNELTFIV VEMLLEFSMS SESLLSFVSR RIISSSGLLS ILLKAERFLD QDVMKKLHDL
0301: FLKLIGDPVF KCEFAKAFVS YYPVVISEVV KQGTDNAFKK YPLLSTFSVQ ILTVPTLTPF LVKEMNLLAM LLGCLSDIFV SCSGEDGLLQ ATKLERLCET
0401: SERVIGDLKF VMSHAIVSKY ATHEHRELSR SWLTLLTFAQ GMNPLKRETG IPIDEENDYM HLFFVLGHSI AVIHSLLVNG TYSAASDEEI ENDRNAKEEF
0501: DKCDGDGERY AKVGRLSHED SVCTAIVSSS SFDSSMASEV HKIDPFHALL PSSAIYLIRE CLKVLETCLG NDEGISKFLC KLSSSSGRNI PESKMSWPRR
0601: DLLNVETGGS VSSNLASSSR DPSTGLSPLC GDIQTNLSLD NVCGPYGVVQ TDVTADSKRV SCNSADLTKN ASGLRILGLC DWPDIHYDVS SQAISVHLPL
0701: HRLLSLLIQK ALRICYGESA SYNGVSISHE IPHADFFSSV IGDFHPCGFS ALVMEHVLQI RVFCAQVIAG MWKKNGDSAL VSCEWYRSVR WSEQGLELDL
0801: FLLQCCAALA PADSYVDKLL SRFGLSSYLS LNPDITNEYE PVLVQEMLGL LIQILQERRF CGLSTAESLR REIIFKLATG DFTHSQLVKS LPRDLSKSDE
0901: LQEVLDDVSV YCNPSGMNQG KYSLQSSCWK ELDLYHPRWQ SRDLQSAEER FSRYCGVSAL TTQLPRWRMI YPPLKGLARI GTCKATFQII SSALYYALQS
1001: GTSVKSRAPD GVLITALQLL SLSLDICTQQ RQSNSQDCCL ENSIPILELA GLEIIGIAQG TEKESLLSLL VSLMKTRMGD GRHQFPEPGS CNISSWIGNL
1101: LKKFSAIDSV CMNLLQSLAP EVVGQSGFDK VMSGSTSDEK RKAKAKERQA AIMAKMKAEQ SKFLSTLSSS MDDDDPRSEF ETSDSVMEHD SEIAVREVCS
1201: LCHDPDSKDP VSFLIFLQKS KLLSFVDRGP PSWDQCPQSE KKISVDGAPD LLRMNASSDS LRISSPLMLQ LSDDTISESA NMIESIKARL IGNGQTEKRS
1301: SDGRGKDESN MESLEIAMYQ TVRNKIENMI NQSLTRVDHQ PHEAENCSEK NSVGGPSTLQ GRFPDIRSRQ TSRRPDAGSD GFHPIDCDGV YLSSCGHAVH
1401: QSCLERYLKS LKERSGRRTV FEGAHIVDLK KKEFLCPVCR RLANSVLPEC PGDLCSVSKL QDSPRTKLRR KDALQPSLWL SEALCLLRSA AEVIEDGDRG
1501: KTVTPQGDGP RRKDLKSVSK MLWDFYFPKP EDKTLKRLWL PPQSIVMWDT LKYSLISMEI GTRFAKNSML PVYCIDSLYE ELKTSKGTIL SVLLRVVQSS
1601: RTKNTIHVRQ RFVGMKHLAE SICYGVSSSS SSSIFGSEGT TGSLKNIDLL WNRASDPVLA HDPFSSLMWA LFCLPFPFLT CEESLLSLVH IFHSVSLVQT
1701: VIAYCACRPS ELSELNFGEN LLNDISNALR ESGGWEYFRS NNMDLSCDIK DTIRKYSLPF LRRCALLWKL LKSTPRKLHE ESDMFDLPSD PTTDNMDFIY
1801: SPQSELNHVQ ELEKMFNIPP IDIILNDELL RSSTQIWLQH FQREYRVNRV KRSLCITPVV PFQLMKLPNL YQDLLQRCIK KRCVNCTKVI EEPVLCLLCG
1901: SLCSPIWSPC CRESGCPNHA ITCGAGTGVF LLIRRTTILL QRFARQSPWP SPYLDTFGEE DIDMIRGKRL YLNEERYAAL TYLVGSHGLD RSSKVLGQTT
2001: IGAVLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)