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AT5G02190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.
Computational
Description (TAIR10)
PROMOTION OF CELL SURVIVAL 1 (PCS1); CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G39710.1); Has 2066 Blast hits to 2053 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 96; Plants - 1822; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G02190-MONOMEREC:3.4.23.-eggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AK226937EMBL:AL162508EMBL:BT015130
EMBL:BT015855EMBL:CP002688EnsemblPlants:AT5G02190EnsemblPlants:AT5G02190.1entrez:831845Gene3D:2.40.70.10GeneID:831845
Genevisible:Q9LZL3GO:GO:0004190GO:GO:0005783GO:GO:0008233GO:GO:0012501Gramene:AT5G02190.1hmmpanther:PTHR13683
hmmpanther:PTHR13683:SF347HOGENOM:HOG000238458InterPro:IPR001461InterPro:IPR001969InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861
InterPro:IPR033121KEGG:ath:AT5G02190MEROPS:A01.074OMA:PSKLRFHPANTHER:PTHR13683PaxDb:Q9LZL3Pfam:PF14541
Pfam:PF14543Pfam:Q9LZL3Pfscan:PS51767PhylomeDB:Q9LZL3PIR:T48240PRIDE:Q9LZL3PRO:PR:Q9LZL3
PROSITE:PS00141PROSITE:PS51767ProteinModelPortal:Q9LZL3Proteomes:UP000006548RefSeq:NP_195839.1scanprosite:PS00141SMR:Q9LZL3
STRING:3702.AT5G02190.1SUPFAM:SSF50630TAIR:AT5G02190tair10-symbols:ATASP38tair10-symbols:EMB24tair10-symbols:PCS1UniGene:At.4814
UniGene:At.72020UniGene:At.73063UniProt:Q9LZL3
Coordinates (TAIR10) chr5:+:435322..436683
Molecular Weight (calculated) 49681.10 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.04
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSRFHALFL LLVLSVRTYK CVSSSSSSSS SFSFSSFSSS SSSQTLVLPL KTRITPTDHR PTDKLHFHHN VTLTVTLTVG TPPQNISMVI DTGSELSWLR
101: CNRSSNPNPV NNFDPTRSSS YSPIPCSSPT CRTRTRDFLI PASCDSDKLC HATLSYADAS SSEGNLAAEI FHFGNSTNDS NLIFGCMGSV SGSDPEEDTK
201: TTGLLGMNRG SLSFISQMGF PKFSYCISGT DDFPGFLLLG DSNFTWLTPL NYTPLIRIST PLPYFDRVAY TVQLTGIKVN GKLLPIPKSV LVPDHTGAGQ
301: TMVDSGTQFT FLLGPVYTAL RSHFLNRTNG ILTVYEDPDF VFQGTMDLCY RISPVRIRSG ILHRLPTVSL VFEGAEIAVS GQPLLYRVPH LTVGNDSVYC
401: FTFGNSDLMG MEAYVIGHHH QQNMWIEFDL QRSRIGLAPV ECDVSGQRLG IGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)