AT5G02130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
mutant has Growth rate reduction, increased salt sensitivity; Putative Kinesin Light Chain | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NDP1; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); Has 225 Blast hits to 173 proteins in 57 species: Archae - 4; Bacteria - 100; Metazoa - 49; Fungi - 9; Plants - 38; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:419747..421958 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45767.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRAAAKFSR EAAATIRGRT ISVRGNLIRY STPLRLIHGE ISVPNANHVA IQMVNYALSH ARSQKSDESY AQGMLVLEQC LGNQPNDDQV SHDSKATVLL 101: AMSDLLYESG NSSEAIERLK QVMTLTHSSL AIRVVAVEAL VGLLIQSGQD DASLDVADEF LKLVKESGHE NLQGVVATVK AIKGLAELVK GNIESAESLF 201: RGLENHESCK GNIALSYGEY LHATGNFELA KEMYQKAIQG VTETKESMCS CNMNLKAVSL AATFALGQLE SHIGNFGVAE KTLTDALTKT EEHYGDNHPK 301: VGVILTAVAL MYGNKAKQER SSSILIQEGL YRKALELMKA PPLDSKGIIN MENQEVIALA RAGYAELLLI QENRKSEGEK MKSWAESAWR NKRISLSEAL 401: TLSEPLGKVA IIDARTTRVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)